Os02g0633600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os02g0633600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.71 | 0.583 | 4.81 | 0.304 | 1.06 | 1 | 0.904 | 6.16 | -0.55 | 23.7 | 991.7 | 18942 | -- | -- |
| 200.92 | 0.66 | 4.67 | 1.34 | 1.04 | 1.61 | 0.9 | -- | -0.238 | 23.7 | 975.7 | 14366 | -- | -- |
| 157.19 | 0.584 | 4.81 | 0.261 | 1.06 | 1.02 | -- | 6.22 | -0.553 | 23.7 | 991.9 | 18767 | -- | -- |
| 204.68 | 0.666 | 4.67 | 1.3 | 1.04 | 1.58 | -- | -- | -0.251 | 23.7 | 967.2 | 14320 | -- | -- |
| 226.96 | 0.702 | 4.79 | 0.312 | -- | 1.02 | -- | 6.15 | -0.536 | -- | 995.8 | 18766 | -- | -- |
| 249.87 | 0.741 | 4.69 | 0.943 | 1.05 | -- | 0.83 | -- | -0.336 | 23.7 | -- | -- | -- | -- |
| 252.86 | 0.745 | 4.69 | 0.91 | 1.05 | -- | -- | -- | -0.34 | 23.7 | -- | -- | -- | -- |
| 272.37 | 0.769 | 4.65 | 1.34 | -- | 1.61 | -- | -- | -0.236 | -- | 961.2 | 14388 | -- | -- |
| 245.98 | 0.73 | 4.71 | -- | 1.06 | 1.22 | -- | -- | -0.414 | 23.8 | 982.1 | 15785 | -- | -- |
| 322.31 | 0.839 | 4.67 | 0.94 | -- | -- | -- | -- | -0.327 | -- | -- | -- | -- | -- |
| 274.67 | 0.775 | 4.71 | -- | 1.06 | -- | -- | -- | -0.441 | 23.8 | -- | -- | -- | -- |
| 315 | 0.827 | 4.69 | -- | -- | 1.24 | -- | -- | -0.424 | -- | 986.7 | 13019 | -- | -- |
| 345.62 | 0.868 | 4.69 | -- | -- | -- | -- | -- | -0.431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.92 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 11 | 22 |
| 10 | 159.41 | radiation | 10.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 15 | 159.54 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 17 | 159.59 | radiation | 10.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 18 | 159.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 19 | 159.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 22 | 159.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 23 | 159.70 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 39 | 159.71 | radiation | 10.0 | 43200 | > th | dose independent | no | NA | NA |
| 40 | 159.71 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 152 | 159.87 | radiation | 20.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 224 | 160.21 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 278 | 160.51 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 280 | 160.51 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 313 | 160.70 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 346 | 160.95 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 391 | 161.24 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 392 | 161.25 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 448 | 161.53 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 454 | 161.55 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 10 | 6 |
| 458 | 161.57 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 462 | 161.57 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 463 | 161.57 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 554 | 162.06 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 557 | 162.09 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 600 | 162.46 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 660 | 162.60 | radiation | 20.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 687 | 162.74 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 689 | 162.75 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 929 | 163.23 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 940 | 163.26 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 3 | 4 |