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Os02g0633200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0268) R2 : 0.728
β1 : 0.965 (0.0985) R2dD : 0.0598 R2D : 0.0444
β2 : 2.3 (0.0706) R2dC : 0.691 R2C : 0.514
β3 : -0.805 (0.0572) R2dE : 0.129 R2E : -0.0637
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.336 (0.0574) R2dN8 : 0.0276 R2N8 : 0.0346
σ : 0.502
deviance : 116.15
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_____
C
peak time of C : 15.7
E
wheather : radiation
threshold : 37.61
memory length : 73
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.28
open length of G : 16.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.47 0.503 11 0.93 2.31 -0.819 0.438 -0.614 -0.343 15.6 37.49 74 3.28 16.2
116.12 0.502 11 0.964 2.31 -0.808 0.124 -- -0.34 15.7 37.47 73 3.25 16.3
114.96 0.499 11 0.944 2.31 -0.814 -- -0.481 -0.341 15.7 37.44 73 3.28 16.2
116.15 0.502 11 0.965 2.3 -0.805 -- -- -0.336 15.7 37.61 73 3.28 16.2
204.42 0.666 10.9 1.26 -- -2.21 -- 1.09 0.0935 -- 1.374 281 0.845 15.4
153.41 0.581 11 0.884 2.12 -- 0.153 -- -0.301 16.5 -- -- -- --
153.47 0.58 11 0.885 2.13 -- -- -- -0.3 16.5 -- -- -- --
168.96 0.605 10.9 0.964 -- -2.08 -- -- -0.223 -- 1.807 295 0.0162 14.9
139.47 0.55 11 -- 2.26 -0.815 -- -- -0.411 15.7 34.96 74 3.3 16.1
394.64 0.928 10.9 0.803 -- -- -- -- -0.356 -- -- -- -- --
174.13 0.617 11 -- 2.11 -- -- -- -0.398 16.5 -- -- -- --
184.24 0.632 10.9 -- -- -2.03 -- -- -0.357 -- 1.826 304 0.00696 12.1
411.65 0.947 11 -- -- -- -- -- -0.445 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.85 radiation 40.0 90 < th dose independent rect. 3 16
2 117.95 radiation 40.0 90 < th dose dependent rect. 3 16
4 118.70 wind 5.0 270 < th dose independent rect. 24 7
6 119.36 radiation 40.0 10 < th dose independent rect. 4 16
22 121.18 wind 5.0 90 < th dose independent rect. 3 5
24 121.26 radiation 40.0 10 < th dose dependent rect. 4 16
27 121.68 wind 5.0 270 < th dose independent rect. 3 2
28 121.70 radiation 40.0 90 < th dose dependent rect. 3 8
29 121.73 radiation 30.0 90 < th dose independent rect. 3 6
30 121.80 radiation 20.0 270 < th dose independent rect. 24 9
36 122.11 radiation 30.0 270 < th dose dependent rect. 1 8
41 122.30 wind 9.0 270 < th dose dependent rect. 24 7
46 122.38 radiation 20.0 90 < th dose independent rect. 3 8
55 122.54 wind 7.0 10 < th dose dependent rect. 3 6
60 122.66 wind 9.0 90 < th dose dependent rect. 3 5
67 122.71 wind 5.0 10 < th dose independent rect. 3 6
74 122.87 radiation 40.0 90 < th dose dependent rect. 3 6
79 122.99 precipitation 0.1 90 < th dose independent rect. 3 5
80 122.99 precipitation 0.1 90 < th dose dependent rect. 3 5
81 122.99 temperature 10.0 270 > th dose dependent rect. 24 7
90 123.02 radiation 1.0 270 < th dose dependent rect. 5 21
92 123.05 radiation 40.0 270 < th dose independent rect. 12 18
93 123.08 temperature 10.0 270 > th dose dependent rect. 13 17
107 123.25 radiation 20.0 270 < th dose dependent rect. 1 12
111 123.31 precipitation 0.1 270 < th dose independent rect. 1 6
113 123.31 precipitation 0.1 270 < th dose dependent rect. 1 6
125 123.49 temperature 15.0 270 > th dose independent rect. 13 17
141 123.70 temperature 10.0 90 > th dose independent rect. 3 5
143 123.70 temperature 30.0 90 < th dose independent rect. 3 5
144 123.70 humidity 50.0 90 > th dose independent rect. 3 5
146 123.70 atmosphere 995.0 90 > th dose independent rect. 3 5
147 123.70 atmosphere 1015.0 90 < th dose independent rect. 3 5
148 123.70 temperature 10.0 90 > th dose independent rect. 8 19
151 123.72 radiation 40.0 90 < th dose dependent sin 3 NA
152 123.72 radiation 1.0 270 < th dose dependent rect. 18 8
154 123.75 humidity 50.0 90 > th dose dependent rect. 19 8
157 123.77 wind 9.0 270 < th dose dependent rect. 3 2
158 123.78 precipitation 0.1 10 < th dose independent rect. 3 6
159 123.78 precipitation 0.1 10 < th dose dependent rect. 3 6
163 123.80 precipitation 0.1 270 < th dose independent rect. 2 16
164 123.80 precipitation 0.1 90 < th dose independent rect. 8 19
165 123.80 precipitation 0.1 270 < th dose dependent rect. 2 16
166 123.80 precipitation 0.1 90 < th dose dependent rect. 8 19
176 123.88 precipitation 0.1 270 < th dose independent rect. 3 2
177 123.88 precipitation 0.1 270 < th dose dependent rect. 3 2
181 123.91 wind 9.0 90 < th dose independent rect. 8 19
187 123.99 atmosphere 1010.0 270 < th dose independent rect. 1 6
191 124.01 radiation 1.0 270 < th dose independent rect. 18 8
198 124.07 humidity 70.0 270 > th dose independent rect. 1 6
200 124.08 atmosphere 1005.0 90 > th dose independent rect. 3 5
203 124.08 temperature 10.0 90 > th dose dependent rect. 3 5
211 124.13 temperature 10.0 270 > th dose independent rect. 1 6
213 124.13 temperature 30.0 270 < th dose independent rect. 1 6
214 124.13 humidity 50.0 270 > th dose independent rect. 1 6
216 124.13 atmosphere 995.0 270 > th dose independent rect. 1 6
222 124.14 precipitation 0.1 270 < th dose independent rect. 13 17
224 124.14 precipitation 0.1 270 < th dose dependent rect. 13 17
233 124.17 temperature 10.0 90 > th dose dependent rect. 15 17
239 124.19 humidity 60.0 270 > th dose independent rect. 18 8
240 124.20 temperature 10.0 270 > th dose independent rect. 18 8
242 124.20 radiation 20.0 270 < th dose independent rect. 18 8
246 124.20 temperature 10.0 270 > th dose independent rect. 2 16
247 124.20 atmosphere 1015.0 270 < th dose independent rect. 2 16
263 124.27 radiation 1.0 270 < th dose dependent rect. 14 12
264 124.28 wind 9.0 270 < th dose independent rect. 18 8
284 124.35 precipitation 0.1 90 < th dose independent rect. 19 8
286 124.35 precipitation 0.1 90 < th dose dependent rect. 19 8
293 124.37 precipitation 0.1 270 < th dose independent rect. 6 7
294 124.37 precipitation 0.1 270 < th dose dependent rect. 6 7
298 124.40 temperature 10.0 270 > th dose independent rect. 6 7
299 124.40 atmosphere 995.0 270 > th dose independent rect. 6 7
300 124.40 atmosphere 1015.0 270 < th dose independent rect. 6 7
306 124.41 atmosphere 995.0 270 > th dose independent rect. 18 8
323 124.48 temperature 30.0 90 < th dose dependent rect. 19 8
324 124.49 wind 9.0 270 < th dose independent rect. 6 7
326 124.51 temperature 30.0 270 < th dose independent rect. 18 8
331 124.53 atmosphere 1015.0 270 < th dose independent rect. 13 17
341 124.58 atmosphere 1005.0 10 > th dose independent rect. 3 6
346 124.62 radiation 40.0 90 < th dose dependent rect. 3 12
351 124.65 wind 9.0 270 < th dose independent rect. 2 16
357 124.68 wind 9.0 270 < th dose independent rect. 13 17
362 124.69 temperature 10.0 10 > th dose dependent rect. 15 18
448 125.04 temperature 10.0 10 > th dose independent rect. 3 6
450 125.04 temperature 30.0 10 < th dose independent rect. 3 6
451 125.04 humidity 50.0 10 > th dose independent rect. 3 6
453 125.04 atmosphere 995.0 10 > th dose independent rect. 3 6
454 125.04 atmosphere 1015.0 10 < th dose independent rect. 3 6
455 125.04 temperature 10.0 10 > th dose independent rect. 9 18
459 125.05 temperature 10.0 270 > th dose independent rect. 3 2
461 125.05 temperature 30.0 270 < th dose independent rect. 3 2
462 125.05 humidity 50.0 270 > th dose independent rect. 3 2
465 125.05 atmosphere 995.0 270 > th dose independent rect. 3 2
466 125.05 atmosphere 1010.0 270 < th dose independent rect. 3 2
468 125.05 radiation 20.0 270 < th dose independent rect. 3 2
478 125.05 temperature 10.0 270 > th dose independent rect. 5 22
487 125.08 radiation 40.0 270 < th dose dependent rect. 3 2
503 125.11 temperature 10.0 10 > th dose dependent rect. 3 6
507 125.13 humidity 50.0 270 > th dose independent rect. 6 7
523 125.15 radiation 1.0 270 < th dose dependent rect. 3 2
527 125.16 precipitation 0.1 10 < th dose independent rect. 9 18
530 125.16 precipitation 0.1 10 < th dose dependent rect. 9 18
535 125.20 radiation 1.0 270 < th dose independent rect. 3 2
551 125.23 radiation 40.0 90 < th dose dependent rect. 13 20
572 125.29 wind 9.0 270 < th dose independent rect. 5 22
590 125.34 wind 9.0 10 < th dose independent rect. 9 18
614 125.39 atmosphere 995.0 270 > th dose independent rect. 2 16
662 125.45 temperature 10.0 270 > th dose dependent rect. 3 2
665 125.46 radiation 40.0 270 < th dose independent rect. 11 8
670 125.48 wind 1.0 270 > th dose independent rect. 3 1
672 125.48 atmosphere 995.0 270 > th dose independent rect. 13 17
694 125.58 radiation 40.0 10 < th dose independent rect. 3 6
705 125.64 radiation 30.0 270 < th dose dependent sin 7 NA
706 125.65 atmosphere 1005.0 270 > th dose independent rect. 3 2
714 125.65 atmosphere 1005.0 270 > th dose independent rect. 24 7
745 125.76 radiation 1.0 270 < th dose independent rect. 14 12
748 125.77 radiation 1.0 90 > th dose dependent rect. 8 6
765 125.81 temperature 10.0 1440 > th dose independent rect. 3 7
768 125.81 atmosphere 995.0 1440 > th dose independent rect. 3 7
769 125.81 temperature 10.0 1440 > th dose independent rect. 10 17
800 125.93 humidity 50.0 90 > th dose dependent rect. 3 6
821 126.01 wind 1.0 90 > th dose independent rect. 8 7
838 126.06 temperature 30.0 10 < th dose dependent rect. 20 8
912 126.24 radiation 1.0 270 < th dose independent rect. 5 21
969 126.38 radiation 10.0 90 > th dose independent rect. 8 7