Os02g0633000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0633000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.98 | 0.512 | 3.18 | -0.603 | 0.00983 | -1.2 | 0.107 | 6.05 | 0.124 | 16.9 | 1000 | 821 | -- | -- |
| 122.15 | 0.515 | 3.11 | -0.256 | 0.0147 | -0.523 | 0.294 | -- | 0.109 | 17.2 | 996.4 | 1054 | -- | -- |
| 118.99 | 0.508 | 3.18 | -0.632 | 0.0137 | -1.31 | -- | 6.59 | 0.124 | 13.5 | 1000 | 901 | -- | -- |
| 122.13 | 0.515 | 3.11 | -0.26 | 0.00837 | -0.497 | -- | -- | 0.114 | 17 | 996.2 | 1045 | -- | -- |
| 119.01 | 0.508 | 3.18 | -0.633 | -- | -1.3 | -- | 6.58 | 0.124 | -- | 1000 | 901 | -- | -- |
| 123.19 | 0.52 | 3.12 | -0.245 | 0.0076 | -- | -0.143 | -- | 0.105 | 2.69 | -- | -- | -- | -- |
| 123.25 | 0.52 | 3.12 | -0.242 | 0.0118 | -- | -- | -- | 0.106 | 22.8 | -- | -- | -- | -- |
| 122.13 | 0.515 | 3.11 | -0.26 | -- | -0.493 | -- | -- | 0.114 | -- | 996.1 | 1037 | -- | -- |
| 123.89 | 0.518 | 3.11 | -- | 0.0123 | -0.444 | -- | -- | 0.142 | 17 | 996.2 | 1045 | -- | -- |
| 123.26 | 0.519 | 3.12 | -0.242 | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
| 124.8 | 0.523 | 3.11 | -- | 0.0109 | -- | -- | -- | 0.133 | 21.2 | -- | -- | -- | -- |
| 123.9 | 0.518 | 3.11 | -- | -- | -0.439 | -- | -- | 0.141 | -- | 996.1 | 1037 | -- | -- |
| 124.8 | 0.521 | 3.11 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.92 | wind | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 2 | 109.14 | wind | 1 | 270 | < th | dose dependent | rect. | 8 | 4 |
| 3 | 109.42 | wind | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 9 | 111.13 | wind | 1 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 16 | 112.32 | wind | 1 | 30 | < th | dose dependent | rect. | 11 | 1 |
| 24 | 114.07 | wind | 1 | 270 | < th | dose independent | rect. | 8 | 4 |
| 40 | 114.98 | radiation | 10 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 47 | 115.71 | wind | 1 | 270 | < th | dose independent | rect. | 8 | 12 |
| 54 | 116.12 | radiation | 10 | 270 | < th | dose independent | rect. | 9 | 1 |
| 58 | 116.44 | wind | 1 | 30 | < th | dose independent | rect. | 11 | 1 |
| 60 | 116.51 | wind | 1 | 270 | < th | dose dependent | sin | 21 | NA |
| 74 | 117.20 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 17 | 16 |
| 95 | 117.74 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 7 | 8 |
| 100 | 117.99 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 7 | 17 |
| 104 | 118.06 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 12 | 16 |
| 107 | 118.11 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 21 | 22 |
| 109 | 118.12 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 16 | 8 |
| 112 | 118.22 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 12 | 7 |
| 118 | 118.32 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 3 | 16 |
| 120 | 118.37 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 12 | 23 |
| 133 | 118.54 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 12 | 21 |
| 134 | 118.55 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 18 | 1 |
| 143 | 118.64 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 180 | 118.76 | atmosphere | 995 | 4320 | < th | dose dependent | sin | 9 | NA |
| 184 | 118.80 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 6 | 23 |
| 190 | 118.83 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 17 | 5 |
| 191 | 118.83 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 1 | 23 |
| 197 | 118.86 | atmosphere | 1000 | 720 | > th | dose independent | sin | 14 | NA |
| 198 | 118.86 | atmosphere | 1000 | 720 | < th | dose independent | sin | 14 | NA |
| 200 | 118.86 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 15 | 14 |
| 208 | 118.88 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 10 | 19 |
| 232 | 118.92 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 22 | 8 |
| 249 | 118.93 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 16 | 23 |
| 262 | 118.96 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 3 | 22 |
| 272 | 118.97 | humidity | 60 | 30 | < th | dose dependent | rect. | 18 | 16 |
| 299 | 119.00 | radiation | 1 | 30 | < th | dose independent | rect. | 21 | 23 |
| 300 | 119.01 | atmosphere | 1000 | 720 | > th | dose independent | no | NA | NA |
| 308 | 119.01 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 24 | 22 |
| 314 | 119.02 | atmosphere | 1000 | 720 | < th | dose independent | no | NA | NA |
| 321 | 119.02 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 18 | 23 |
| 322 | 119.02 | humidity | 60 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 323 | 119.02 | radiation | 1 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 353 | 119.03 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 3 | 23 |
| 357 | 119.04 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 19 | 11 |
| 384 | 119.06 | wind | 1 | 270 | > th | dose independent | sin | 21 | NA |
| 434 | 119.12 | wind | 1 | 270 | < th | dose independent | sin | 21 | NA |
| 484 | 119.17 | radiation | 1 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 491 | 119.19 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 536 | 119.26 | radiation | 20 | 10 | < th | dose independent | rect. | 10 | 2 |
| 538 | 119.26 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 567 | 119.31 | radiation | 1 | 30 | > th | dose independent | rect. | 18 | 1 |
| 581 | 119.31 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 588 | 119.32 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 23 | 16 |
| 594 | 119.33 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 10 | 6 |
| 614 | 119.35 | humidity | 60 | 30 | < th | dose independent | rect. | 18 | 1 |
| 640 | 119.36 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 22 | 5 |
| 665 | 119.38 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 14 | 1 |
| 754 | 119.48 | atmosphere | 1000 | 720 | < th | dose dependent | sin | 16 | NA |
| 759 | 119.50 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 1 |
| 764 | 119.51 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 1 |
| 811 | 119.60 | wind | 1 | 720 | > th | dose independent | rect. | 7 | 8 |
| 813 | 119.60 | radiation | 20 | 30 | < th | dose independent | rect. | 20 | 16 |
| 844 | 119.67 | wind | 9 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 845 | 119.67 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 850 | 119.67 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 998 | 119.67 | wind | 9 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 999 | 119.67 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 1 | 1 |