Os02g0632800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0632800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 311.15 | 0.829 | 7.2 | 2.67 | 0.521 | 3.7 | -0.843 | 3.35 | 1.15 | 22.2 | 0.9245 | 11619 | 5.88 | -- |
| 336.67 | 0.855 | 7.23 | 2.21 | 0.806 | 3.68 | -0.533 | -- | 1.04 | 22.2 | 0.9661 | 14930 | 5.84 | -- |
| 307.46 | 0.817 | 7.2 | 2.55 | 0.481 | 3.9 | -- | 3.5 | 1.1 | 22.3 | 0.8622 | 13078 | 5.91 | -- |
| 310.9 | 0.821 | 7.39 | 1.52 | 0.681 | 3.96 | -- | -- | 0.73 | 20.3 | 1.019 | 14503 | 5.02 | -- |
| 312.89 | 0.824 | 7.21 | 2.41 | -- | 4.08 | -- | 3.45 | 1.07 | -- | 0.8797 | 13913 | 6.34 | -- |
| 684.64 | 1.23 | 7.06 | 2.36 | 0.553 | -- | -0.614 | -- | 1.88 | 22.9 | -- | -- | -- | -- |
| 686.16 | 1.23 | 7.05 | 2.38 | 0.555 | -- | -- | -- | 1.88 | 23.1 | -- | -- | -- | -- |
| 318.86 | 0.832 | 7.28 | 1.6 | -- | 3.73 | -- | -- | 0.843 | -- | 1.01 | 14446 | 5.37 | -- |
| 342.05 | 0.861 | 7.4 | -- | 0.448 | 3.92 | -- | -- | 0.581 | 20.4 | 0.9891 | 18769 | 5.34 | -- |
| 705.42 | 1.24 | 7.04 | 2.4 | -- | -- | -- | -- | 1.89 | -- | -- | -- | -- | -- |
| 836.04 | 1.35 | 7.11 | -- | 0.579 | -- | -- | -- | 1.62 | 23.4 | -- | -- | -- | -- |
| 322.83 | 0.837 | 7.31 | -- | -- | 3.79 | -- | -- | 0.582 | -- | 0.44 | 35520 | 5.48 | -- |
| 857.09 | 1.37 | 7.1 | -- | -- | -- | -- | -- | 1.62 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 280.37 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 23 | 282.76 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 27 | 285.36 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 29 | 286.11 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 32 | 286.88 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 36 | 286.95 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 49 | 289.41 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 51 | 290.05 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 52 | 290.09 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 56 | 291.05 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 60 | 291.18 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 77 | 292.75 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 78 | 292.78 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 81 | 293.35 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 82 | 293.36 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 101 | 293.47 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 22 |
| 106 | 294.15 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 109 | 294.35 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 131 | 294.71 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 138 | 295.26 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 166 | 296.04 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 168 | 296.36 | radiation | 1.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 169 | 296.41 | radiation | 1.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 170 | 296.44 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 174 | 296.70 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 12 |
| 176 | 296.72 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 217 | 297.90 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 232 | 298.20 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 234 | 298.24 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 249 | 298.49 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 257 | 298.51 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 18 |
| 279 | 298.85 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 294 | 299.24 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 296 | 299.29 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 309 | 299.72 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 317 | 299.84 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 326 | 299.96 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 327 | 299.97 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 332 | 299.98 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 22 |
| 353 | 300.24 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 363 | 300.30 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 364 | 300.31 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 397 | 300.46 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 399 | 300.47 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 16 |
| 411 | 300.53 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 23 |
| 428 | 300.56 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |
| 430 | 300.56 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 431 | 300.56 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 438 | 300.57 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 502 | 300.79 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 555 | 301.01 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 562 | 301.07 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 18 |
| 566 | 301.08 | humidity | 90.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 586 | 301.16 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 620 | 301.37 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 632 | 301.45 | humidity | 90.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 633 | 301.45 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 649 | 301.49 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 2 | NA |
| 671 | 301.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 677 | 301.76 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 727 | 301.81 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 734 | 301.91 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 755 | 302.03 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 17 |
| 761 | 302.07 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 768 | 302.16 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 8 |
| 808 | 302.45 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 860 | 302.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 863 | 302.66 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 864 | 302.66 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 891 | 302.92 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 921 | 303.11 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 995 | 303.57 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 21 |