Os02g0632700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0632700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 367.83 | 0.901 | 4.43 | -0.139 | 0.763 | 1.64 | -0.224 | -0.169 | -0.183 | 6.6 | 20.67 | 814 | -- | -- |
| 367.77 | 0.893 | 4.43 | -0.118 | 0.749 | 1.67 | -0.173 | -- | -0.179 | 6.65 | 20.65 | 853 | -- | -- |
| 367.82 | 0.893 | 4.43 | -0.141 | 0.749 | 1.66 | -- | -0.1 | -0.183 | 6.67 | 20.67 | 848 | -- | -- |
| 367.85 | 0.893 | 4.43 | -0.121 | 0.75 | 1.67 | -- | -- | -0.179 | 6.67 | 20.7 | 848 | -- | -- |
| 393.89 | 0.924 | 4.45 | -0.182 | -- | 1.63 | -- | -0.129 | -0.174 | -- | 20.7 | 1065 | -- | -- |
| 446.18 | 0.99 | 4.35 | 0.511 | 0.665 | -- | -0.594 | -- | 0.202 | 5.29 | -- | -- | -- | -- |
| 447.04 | 0.99 | 4.35 | 0.51 | 0.662 | -- | -- | -- | 0.205 | 5.37 | -- | -- | -- | -- |
| 393.95 | 0.924 | 4.44 | -0.143 | -- | 1.66 | -- | -- | -0.171 | -- | 20.68 | 1065 | -- | -- |
| 368.18 | 0.894 | 4.42 | -- | 0.746 | 1.63 | -- | -- | -0.158 | 6.65 | 20.66 | 848 | -- | -- |
| 469.9 | 1.01 | 4.35 | 0.533 | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
| 453.91 | 0.997 | 4.36 | -- | 0.671 | -- | -- | -- | 0.148 | 5.34 | -- | -- | -- | -- |
| 394.41 | 0.925 | 4.44 | -- | -- | 1.61 | -- | -- | -0.146 | -- | 20.61 | 1065 | -- | -- |
| 477.39 | 1.02 | 4.37 | -- | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 365.62 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 16 |
| 3 | 366.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 10 | 367.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 11 | 367.45 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 13 |
| 13 | 367.71 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 14 | 367.74 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 19 |
| 19 | 367.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 31 | 368.38 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 14 |
| 34 | 368.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 37 | 368.60 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 38 | 368.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 41 | 368.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 59 | 369.16 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 83 | 369.43 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 21 |
| 105 | 369.83 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 23 |
| 151 | 370.41 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 152 | 370.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 164 | 370.59 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 254 | 371.83 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 289 | 372.33 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 343 | 372.97 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 365 | 373.17 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 394 | 373.60 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 432 | 374.25 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 469 | 374.69 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 477 | 374.80 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 760 | 378.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 790 | 378.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 900 | 380.52 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 966 | 381.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 18 |