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Os02g0630300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Gibberellin 2-oxidase 3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.54 (0.0621) R2 : 0.522
β1 : 1.14 (0.229) R2dD : 0.028 R2D : -0.0208
β2 : 2.77 (0.16) R2dC : 0.377 R2C : 0.141
β3 : -2.75 (0.189) R2dE : 0.281 R2E : -0.0315
β4 : 3.58 (0.668) R2dD*C : 0.0422 R2D*C : 0.0241
β5 : 2.8 (0.791) R2dD*E : 0.0191 R2D*E : 0.0339
γ1 : 0.746 (0.133) R2dN8 : 0.0457 R2N8 : 0.058
σ : 1.16
deviance : 605.83
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C
peak time of C : 1.19
E
wheather : humidity
threshold : 90
memory length : 374
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12
open length of G : 17.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
605.83 1.16 9.54 1.14 2.77 -2.75 3.58 2.8 0.746 1.19 90 374 12 17.7
621.5 1.16 9.56 1.11 2.72 -2.76 4.67 -- 0.753 1.28 90.05 394 11.9 17.8
644.86 1.18 9.52 1.13 2.74 -2.64 -- 4.49 0.752 1.04 90 375 12 17.7
709.82 1.24 9.6 1.01 2.55 -2.47 -- -- 0.689 0.98 90.28 415 12.6 17.1
874.25 1.38 9.52 1.05 -- -3.67 -- 2.14 0.817 -- 89 864 11.8 18.5
819.56 1.34 9.52 0.79 2.29 -- 2.78 -- 1.06 23.1 -- -- -- --
850.58 1.37 9.53 0.684 2.29 -- -- -- 1.05 22.8 -- -- -- --
866.16 1.37 9.55 1.16 -- -3.28 -- -- 0.742 -- 87 859 12.9 19.6
734.3 1.26 9.58 -- 2.58 -2.37 -- -- 0.699 0.788 91.06 396 12.6 16.9
1175.69 1.6 9.47 0.731 -- -- -- -- 1.07 -- -- -- -- --
862.89 1.37 9.55 -- 2.3 -- -- -- 0.976 22.8 -- -- -- --
878.1 1.38 9.58 -- -- -3.31 -- -- 0.619 -- 86.11 878 15.7 17.7
1189.79 1.61 9.49 -- -- -- -- -- 0.986 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 621.11 humidity 90 270 > th dose dependent rect. 12 17
4 622.33 humidity 90 270 > th dose dependent sin 13 NA
47 634.56 humidity 90 270 > th dose independent rect. 12 18
55 635.17 humidity 90 270 > th dose independent sin 12 NA
91 639.21 humidity 90 270 > th dose independent rect. 18 12
106 640.92 temperature 20 720 > th dose independent rect. 21 8
128 643.33 temperature 20 720 < th dose independent rect. 13 17
132 643.51 temperature 20 720 < th dose independent rect. 11 19
134 643.53 temperature 20 720 < th dose independent rect. 9 21
139 643.98 temperature 30 720 < th dose dependent rect. 18 13
140 644.03 humidity 90 270 < th dose independent rect. 9 22
145 644.73 humidity 90 270 < th dose independent rect. 16 14
156 645.74 humidity 90 270 > th dose dependent no NA NA
163 646.04 humidity 90 270 > th dose dependent rect. 16 23
185 647.07 humidity 90 270 > th dose dependent rect. 19 23
209 648.55 temperature 20 720 > th dose independent rect. 8 21
236 650.19 humidity 90 270 > th dose dependent rect. 24 23
253 651.10 temperature 30 720 < th dose dependent sin 12 NA
255 651.28 humidity 70 270 > th dose dependent rect. 20 13
259 651.34 temperature 20 720 > th dose independent rect. 3 21
261 651.57 temperature 20 720 > th dose independent rect. 1 23
281 652.38 temperature 20 720 < th dose independent sin 14 NA
293 653.16 temperature 20 720 > th dose independent rect. 14 15
296 653.33 temperature 20 720 < th dose independent rect. 3 21
321 654.18 temperature 20 720 > th dose independent rect. 16 14
330 654.58 temperature 25 270 < th dose dependent rect. 23 9
370 655.93 temperature 30 720 < th dose independent rect. 18 9
408 657.21 temperature 20 270 < th dose independent sin 9 NA
424 657.71 temperature 20 720 > th dose independent sin 11 NA
440 658.23 temperature 10 720 > th dose dependent rect. 21 8
453 658.63 temperature 20 720 > th dose independent no NA NA
455 658.71 temperature 20 720 > th dose independent rect. 20 23
469 658.99 temperature 20 720 > th dose independent rect. 14 23
475 659.22 temperature 20 270 < th dose independent rect. 20 22
478 659.29 temperature 20 720 > th dose independent rect. 16 23
505 660.08 humidity 90 270 < th dose independent sin 14 NA
530 660.47 temperature 20 270 < th dose independent rect. 23 22
548 660.87 temperature 20 270 < th dose independent rect. 23 9
604 661.74 temperature 20 720 > th dose independent rect. 12 23
621 662.00 temperature 10 720 > th dose dependent sin 10 NA
671 662.91 temperature 10 720 > th dose dependent rect. 18 15
710 663.68 temperature 20 270 < th dose independent no NA NA
797 664.66 humidity 90 270 > th dose independent rect. 18 23
804 664.72 temperature 20 720 > th dose independent sin 22 NA
865 665.34 temperature 20 720 > th dose independent rect. 23 14
873 665.38 humidity 90 270 > th dose independent rect. 20 23
886 665.54 temperature 20 720 > th dose independent rect. 21 18
914 665.89 humidity 90 270 > th dose independent no NA NA
923 666.04 temperature 25 270 < th dose dependent sin 8 NA
940 666.30 humidity 90 270 > th dose independent rect. 16 23
951 666.62 temperature 20 720 > th dose independent rect. 23 12
958 666.74 humidity 80 4320 > th dose independent rect. 11 3
974 666.85 temperature 25 720 < th dose dependent rect. 21 4