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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0628900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.39 (0.0381) R2 : 0.687
β1 : 3.24 (0.139) R2dD : 0.385 R2D : 0.316
β2 : 1.9 (0.095) R2dC : 0.273 R2C : 0.276
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.8 (0.0813) R2dN8 : 0.089 R2N8 : 0.0139
σ : 0.716
deviance : 233.82
__
_____
C
peak time of C : 3.19
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.06 0.683 5.26 4.06 1.93 0.486 -0.947 -2.21 1.09 3.19 19.52 4069 -- --
214.77 0.683 5.34 3.83 1.94 1.08 -0.778 -- 1.03 3.1 19.2 2582 -- --
213.38 0.68 5.26 4.04 1.91 0.525 -- -2.1 1.09 3.19 19.5 3357 -- --
217.23 0.686 5.34 3.85 1.9 1.14 -- -- 1.05 3.12 19 3320 -- --
404.59 0.942 5.35 3.63 -- 0.919 -- -0.37 1.01 -- 19.5 3357 -- --
231.81 0.714 5.39 3.23 1.9 -- -0.786 -- 0.795 3.19 -- -- -- --
233.82 0.716 5.39 3.24 1.9 -- -- -- 0.8 3.19 -- -- -- --
404.08 0.94 5.36 3.62 -- 1.08 -- -- 0.989 -- 19 3320 -- --
454.73 0.993 5.3 -- 1.68 -1.37 -- -- 0.618 3.04 19.9 7943 -- --
437.92 0.978 5.39 3.32 -- -- -- -- 0.849 -- -- -- -- --
510.82 1.06 5.47 -- 1.96 -- -- -- 0.439 3.2 -- -- -- --
512.47 1.05 5.63 -- -- -2.19 -- -- -0.236 -- 21.07 47520 -- --
729.12 1.26 5.47 -- -- -- -- -- 0.481 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.66 temperature 20 4320 < th dose dependent rect. 18 1
2 203.68 radiation 20 1440 < th dose independent rect. 12 1
7 204.59 temperature 20 4320 < th dose independent rect. 13 6
11 205.13 temperature 20 4320 > th dose independent rect. 13 6
34 206.86 radiation 20 4320 < th dose independent rect. 17 2
37 207.13 radiation 20 4320 < th dose independent rect. 17 11
38 207.14 humidity 50 43200 < th dose independent rect. 3 6
45 207.17 radiation 20 4320 < th dose independent rect. 17 4
48 207.19 humidity 50 43200 > th dose independent rect. 24 9
49 207.19 humidity 50 43200 > th dose independent rect. 22 11
55 207.27 radiation 20 4320 < th dose independent rect. 17 8
56 207.29 radiation 20 4320 < th dose independent rect. 17 6
88 207.99 humidity 50 43200 < th dose independent rect. 5 3
119 208.47 radiation 20 4320 < th dose independent rect. 17 14
129 208.61 humidity 50 43200 > th dose independent rect. 5 3
141 208.77 radiation 30 1440 < th dose dependent rect. 12 1
146 208.79 humidity 50 43200 < th dose independent rect. 19 14
170 209.17 temperature 20 270 > th dose dependent rect. 7 19
201 209.51 radiation 40 4320 > th dose independent rect. 7 1
217 209.51 radiation 40 4320 > th dose dependent rect. 7 1
238 209.60 radiation 30 4320 > th dose dependent rect. 16 1
260 209.67 temperature 20 4320 > th dose independent rect. 13 1
262 209.68 temperature 20 4320 < th dose independent sin 17 NA
265 209.74 radiation 20 4320 < th dose independent rect. 6 1
266 209.74 radiation 1 14400 < th dose dependent rect. 4 1
268 209.76 wind 1 43200 < th dose dependent rect. 8 17
270 209.77 temperature 20 4320 > th dose independent sin 17 NA
282 209.84 humidity 50 43200 < th dose dependent rect. 3 6
288 209.85 radiation 20 4320 < th dose independent rect. 21 10
297 209.89 radiation 20 4320 < th dose independent rect. 24 7
299 209.89 humidity 50 43200 < th dose dependent rect. 20 13
300 209.90 wind 1 43200 < th dose dependent rect. 11 1
323 210.04 humidity 50 43200 < th dose dependent rect. 7 2
329 210.09 radiation 1 4320 > th dose dependent rect. 6 2
330 210.10 temperature 20 10 > th dose independent rect. 12 15
331 210.10 radiation 40 4320 < th dose dependent rect. 6 2
336 210.14 humidity 50 43200 > th dose independent rect. 19 14
359 210.33 temperature 20 1440 < th dose independent rect. 5 1
371 210.41 atmosphere 1005 14400 < th dose independent rect. 16 1
386 210.46 radiation 10 4320 > th dose dependent rect. 16 16
389 210.47 radiation 40 4320 < th dose independent rect. 15 17
395 210.48 radiation 40 43200 < th dose dependent rect. 4 1
401 210.50 temperature 20 1440 > th dose independent rect. 4 3
409 210.52 temperature 20 1440 < th dose independent rect. 4 3
410 210.52 humidity 50 43200 < th dose dependent rect. 17 16
424 210.59 atmosphere 1005 14400 > th dose independent rect. 16 1
426 210.60 radiation 20 1440 < th dose independent rect. 8 5
441 210.64 temperature 20 1440 > th dose independent rect. 5 1
452 210.70 wind 3 43200 > th dose independent rect. 13 2
456 210.71 temperature 20 90 > th dose dependent rect. 11 16
472 210.77 wind 5 43200 < th dose dependent rect. 14 1
486 210.83 humidity 90 4320 > th dose independent rect. 16 2
494 210.87 wind 1 43200 < th dose dependent sin 18 NA
496 210.88 wind 3 43200 < th dose independent rect. 13 1
509 210.92 wind 1 43200 < th dose independent rect. 14 12
511 210.93 humidity 90 4320 < th dose independent rect. 16 2
515 210.95 temperature 20 4320 < th dose independent rect. 13 1
540 211.06 temperature 20 270 > th dose dependent rect. 19 21
566 211.17 humidity 60 43200 > th dose independent rect. 23 4
591 211.23 radiation 1 14400 < th dose independent rect. 18 11
599 211.25 wind 3 43200 > th dose independent rect. 11 6
632 211.35 temperature 25 270 > th dose independent rect. 7 19
637 211.35 radiation 20 43200 < th dose dependent rect. 19 10
643 211.37 humidity 70 43200 < th dose dependent rect. 22 8
648 211.38 radiation 1 14400 < th dose dependent rect. 19 10
657 211.39 radiation 40 4320 < th dose dependent rect. 17 15
663 211.40 wind 3 43200 > th dose independent rect. 11 10
668 211.41 radiation 10 4320 > th dose dependent rect. 17 1
691 211.45 wind 3 43200 < th dose independent rect. 11 6
729 211.50 humidity 70 43200 > th dose independent rect. 1 1
741 211.53 wind 3 43200 > th dose independent rect. 9 12
746 211.54 wind 1 43200 < th dose independent rect. 11 15
762 211.58 humidity 70 43200 < th dose dependent rect. 24 2
767 211.59 wind 1 43200 > th dose dependent rect. 15 1
772 211.60 temperature 25 270 > th dose independent rect. 19 22
776 211.61 humidity 70 43200 < th dose dependent rect. 23 5
788 211.62 radiation 40 4320 < th dose dependent rect. 22 10
794 211.63 radiation 40 4320 < th dose dependent rect. 3 5
796 211.63 radiation 40 4320 < th dose dependent rect. 24 8
808 211.65 wind 3 43200 < th dose independent rect. 11 10
809 211.65 wind 1 43200 > th dose independent rect. 14 12
814 211.66 wind 3 43200 < th dose independent rect. 9 12
820 211.67 wind 1 43200 > th dose independent rect. 8 18
838 211.71 humidity 70 43200 < th dose independent rect. 23 7
848 211.72 temperature 20 1440 < th dose dependent rect. 13 1
851 211.73 humidity 70 43200 < th dose independent rect. 24 3
875 211.77 wind 1 43200 > th dose independent rect. 8 4
891 211.80 wind 1 43200 < th dose independent rect. 8 18
896 211.83 temperature 20 4320 < th dose independent rect. 22 1
899 211.83 wind 1 43200 > th dose independent rect. 11 15
943 211.90 temperature 20 4320 < th dose independent rect. 5 19
949 211.92 wind 1 43200 < th dose independent rect. 11 1
959 211.93 wind 1 43200 < th dose independent rect. 10 18
972 211.94 wind 5 43200 < th dose dependent rect. 13 8
990 211.96 wind 1 43200 > th dose independent rect. 2 1
991 211.96 wind 1 43200 > th dose independent rect. 11 1
992 211.96 radiation 1 14400 < th dose independent rect. 18 3
998 211.96 temperature 20 4320 > th dose independent rect. 5 19