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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0628200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF250 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.86 (0.0433) R2 : 0.369
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.834 (0.108) R2dC : 0.0896 R2C : -0.0324
β3 : -2.35 (0.194) R2dE : 0.23 R2E : 0.154
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.789 (0.0916) R2dN8 : 0.13 R2N8 : 0.141
σ : 0.809
deviance : 301.72
__
_____
C
peak time of C : 11.5
E
wheather : temperature
threshold : 6.354
memory length : 2
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.98
open length of G : 22.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
286.57 0.795 5.91 -0.569 0.864 -2.15 1.28 -5.62 -0.886 11.7 9.942 4 5.95 22.3
301.5 0.809 5.88 -0.191 0.774 -2.2 0.366 -- -0.824 11.1 5.313 2 5.97 22.3
292.04 0.802 5.89 -0.406 0.834 -2.16 -- -4.3 -0.859 11.6 8.577 4 5.83 22.4
301.36 0.809 5.87 -0.115 0.824 -2.33 -- -- -0.789 11.5 6.321 2 5.97 22.2
327.89 0.843 5.92 -0.345 -- -1.68 -- -4.33 -0.862 -- 6.132 12 5.83 22.3
366.4 0.897 5.89 -0.378 0.822 -- 1.24 -- -0.973 7.38 -- -- -- --
370.43 0.901 5.89 -0.348 0.822 -- -- -- -0.974 7.59 -- -- -- --
335.75 0.853 5.9 -0.234 -- -1.88 -- -- -0.85 -- -8.73 4 5.97 22.3
301.72 0.809 5.86 -- 0.834 -2.35 -- -- -0.789 11.5 6.354 2 5.98 22.3
406.71 0.942 5.91 -0.336 -- -- -- -- -0.961 -- -- -- -- --
373.62 0.904 5.88 -- 0.819 -- -- -- -0.935 7.62 -- -- -- --
337.54 0.856 5.89 -- -- -1.9 -- -- -0.844 -- -7.404 5 5.95 22.3
409.69 0.945 5.9 -- -- -- -- -- -0.924 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 307.27 temperature 15.0 10 > th dose dependent rect. 6 22
3 307.88 temperature 10.0 90 > th dose dependent rect. 5 22
19 316.53 humidity 50.0 1440 < th dose dependent rect. 16 1
20 316.69 humidity 50.0 1440 < th dose independent rect. 16 1
27 318.29 wind 9.0 14400 > th dose dependent rect. 12 1
48 321.73 wind 1.0 90 < th dose independent rect. 4 1
49 321.78 temperature 25.0 4320 < th dose independent rect. 2 1
50 322.01 wind 1.0 90 < th dose dependent rect. 4 1
51 322.16 temperature 15.0 10 > th dose dependent rect. 6 18
54 322.23 wind 5.0 43200 < th dose dependent rect. 1 1
73 323.96 wind 9.0 14400 > th dose independent rect. 10 3
74 323.97 humidity 50.0 1440 > th dose independent rect. 16 1
92 325.02 wind 9.0 14400 < th dose independent rect. 10 3
94 325.12 temperature 15.0 90 > th dose dependent rect. 4 1
95 325.23 wind 1.0 43200 > th dose dependent rect. 1 1
97 325.33 wind 9.0 14400 > th dose independent rect. 12 1
99 325.34 wind 9.0 14400 > th dose independent rect. 7 6
112 325.68 temperature 30.0 90 < th dose independent rect. 3 16
114 325.91 wind 9.0 14400 < th dose independent rect. 12 1
117 326.02 wind 3.0 43200 > th dose independent rect. 1 2
120 326.17 wind 3.0 1440 < th dose independent rect. 8 3
122 326.23 wind 3.0 43200 < th dose independent rect. 1 2
126 326.45 wind 9.0 14400 < th dose independent rect. 5 8
140 327.13 wind 3.0 1440 > th dose independent rect. 8 3
142 327.15 humidity 80.0 14400 < th dose dependent rect. 5 2
147 327.30 temperature 25.0 4320 > th dose independent rect. 24 1
151 327.39 atmosphere 1000.0 90 > th dose independent rect. 4 1
153 327.41 temperature 30.0 720 > th dose dependent rect. 18 1
176 327.71 temperature 30.0 10 < th dose dependent rect. 4 16
183 327.89 humidity 70.0 90 > th dose dependent rect. 4 1
194 328.02 humidity 80.0 14400 < th dose independent rect. 5 2
196 328.10 temperature 25.0 270 < th dose independent rect. 24 19
200 328.15 temperature 25.0 90 < th dose independent rect. 3 18
203 328.19 humidity 80.0 14400 > th dose independent rect. 5 2
214 328.38 temperature 10.0 270 > th dose dependent rect. 5 10
225 328.52 wind 9.0 14400 < th dose independent rect. 1 13
227 328.54 humidity 80.0 90 > th dose independent rect. 4 1
238 328.69 wind 9.0 90 < th dose independent rect. 5 23
248 328.81 radiation 1.0 90 < th dose independent rect. 4 1
250 328.83 radiation 10.0 90 < th dose dependent rect. 4 1
252 328.84 temperature 20.0 90 > th dose independent rect. 4 1
253 328.84 precipitation 0.1 90 < th dose independent rect. 4 1
254 328.84 precipitation 0.1 90 < th dose dependent rect. 4 1
263 328.87 temperature 10.0 90 > th dose independent rect. 4 1
265 328.87 temperature 30.0 90 < th dose independent rect. 4 1
266 328.87 humidity 50.0 90 > th dose independent rect. 4 1
270 328.87 atmosphere 1010.0 90 < th dose independent rect. 4 1
275 328.87 temperature 10.0 90 > th dose independent rect. 5 23
311 329.49 wind 9.0 14400 > th dose dependent rect. 6 7
316 329.51 wind 3.0 1440 < th dose dependent rect. 8 3
349 329.94 humidity 80.0 14400 < th dose independent rect. 3 1
355 330.09 atmosphere 995.0 90 > th dose dependent rect. 4 1
357 330.13 wind 3.0 1440 < th dose dependent rect. 8 5
373 330.33 humidity 80.0 14400 < th dose dependent rect. 3 1
379 330.45 temperature 30.0 270 < th dose dependent rect. 24 19
422 331.07 wind 9.0 14400 > th dose independent rect. 1 13
436 331.19 temperature 20.0 720 > th dose dependent rect. 6 1
490 331.79 wind 3.0 10 < th dose dependent rect. 4 2
507 332.02 atmosphere 1015.0 90 < th dose dependent rect. 4 1
604 333.17 atmosphere 995.0 4320 > th dose independent rect. 5 1
606 333.20 wind 5.0 43200 < th dose dependent rect. 23 4
614 333.31 wind 3.0 43200 < th dose dependent rect. 21 9
682 334.15 temperature 20.0 720 > th dose independent rect. 5 2
715 334.44 atmosphere 1005.0 10 > th dose independent rect. 4 2
724 334.50 wind 9.0 14400 < th dose independent sin 4 NA
768 334.87 temperature 30.0 90 < th dose dependent rect. 11 10
771 334.89 temperature 20.0 10 > th dose dependent rect. 6 12
786 335.03 temperature 20.0 10 > th dose dependent rect. 6 10
803 335.22 temperature 10.0 270 > th dose dependent rect. 17 22
806 335.27 humidity 80.0 1440 < th dose independent rect. 6 6
810 335.32 atmosphere 995.0 10 > th dose dependent rect. 4 17
827 335.53 temperature 30.0 10 < th dose dependent rect. 10 11
829 335.55 wind 9.0 14400 > th dose independent sin 4 NA
840 335.60 humidity 50.0 4320 < th dose independent sin 13 NA
860 335.65 wind 9.0 14400 > th dose dependent rect. 1 13
917 335.83 temperature 10.0 10 > th dose dependent sin 22 NA
920 335.85 precipitation 0.1 4320 > th dose dependent rect. 24 6
937 335.93 humidity 50.0 4320 < th dose dependent sin 11 NA
960 336.04 humidity 50.0 4320 < th dose independent rect. 14 20
962 336.05 humidity 50.0 4320 < th dose independent rect. 14 4
999 336.16 temperature 25.0 270 > th dose dependent rect. 18 20