Os02g0625900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0625900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.35 | 0.434 | 2.87 | -0.558 | 0.106 | 0.309 | -0.0838 | -2.5 | -0.137 | 9.35 | 10.96 | 4475 | -- | -- |
| 90.01 | 0.442 | 2.84 | -0.274 | 0.116 | 0.244 | -0.251 | -- | -0.0381 | 9.74 | 11.76 | 4480 | -- | -- |
| 85.37 | 0.43 | 2.87 | -0.56 | 0.106 | 0.307 | -- | -2.51 | -0.136 | 9.74 | 10.97 | 4475 | -- | -- |
| 90.07 | 0.442 | 2.83 | -0.297 | 0.111 | 0.256 | -- | -- | -0.0392 | 10 | 10.26 | 4485 | -- | -- |
| 86.02 | 0.432 | 2.87 | -0.554 | -- | 0.326 | -- | -2.49 | -0.133 | -- | 11.1 | 4492 | -- | -- |
| 91.04 | 0.447 | 2.82 | -0.237 | 0.122 | -- | -0.186 | -- | 0.0257 | 10 | -- | -- | -- | -- |
| 91.17 | 0.447 | 2.82 | -0.244 | 0.123 | -- | -- | -- | 0.0257 | 10.5 | -- | -- | -- | -- |
| 90.75 | 0.444 | 2.84 | -0.288 | -- | 0.296 | -- | -- | -0.0529 | -- | 10.23 | 4526 | -- | -- |
| 90.77 | 0.444 | 2.82 | -- | 0.0797 | 0.356 | -- | -- | -0.0249 | 10.4 | 8.931 | 4579 | -- | -- |
| 92.09 | 0.448 | 2.82 | -0.246 | -- | -- | -- | -- | 0.0252 | -- | -- | -- | -- | -- |
| 92.74 | 0.45 | 2.81 | -- | 0.124 | -- | -- | -- | 0.0529 | 10.6 | -- | -- | -- | -- |
| 91.1 | 0.445 | 2.83 | -- | -- | 0.464 | -- | -- | -0.00531 | -- | 8.651 | 4535 | -- | -- |
| 93.68 | 0.452 | 2.82 | -- | -- | -- | -- | -- | 0.0525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.56 | wind | 1 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 3 | 83.59 | wind | 1 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 9 | 84.34 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 19 | 84.34 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 45 | 84.91 | humidity | 60 | 4320 | > th | dose independent | rect. | 24 | 9 |
| 46 | 84.95 | wind | 1 | 10 | < th | dose independent | rect. | 5 | 5 |
| 53 | 85.10 | humidity | 60 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 68 | 85.21 | humidity | 60 | 4320 | > th | dose independent | rect. | 22 | 11 |
| 69 | 85.22 | humidity | 60 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 70 | 85.24 | radiation | 10 | 4320 | > th | dose independent | rect. | 12 | 22 |
| 76 | 85.34 | humidity | 60 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 86 | 85.50 | humidity | 60 | 270 | < th | dose independent | rect. | 9 | 1 |
| 89 | 85.50 | humidity | 70 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 90 | 85.51 | radiation | 10 | 4320 | > th | dose independent | rect. | 6 | 11 |
| 105 | 85.54 | humidity | 80 | 4320 | > th | dose independent | rect. | 4 | 10 |
| 108 | 85.55 | radiation | 10 | 4320 | < th | dose dependent | rect. | 7 | 10 |
| 109 | 85.56 | humidity | 80 | 4320 | > th | dose independent | rect. | 5 | 8 |
| 130 | 85.66 | radiation | 10 | 4320 | > th | dose independent | no | NA | NA |
| 133 | 85.66 | humidity | 80 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 134 | 85.66 | humidity | 80 | 4320 | < th | dose independent | rect. | 4 | 10 |
| 262 | 85.68 | humidity | 80 | 4320 | > th | dose independent | rect. | 23 | 15 |
| 264 | 85.68 | wind | 1 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 266 | 85.69 | humidity | 80 | 4320 | > th | dose independent | sin | 4 | NA |
| 306 | 85.74 | radiation | 10 | 4320 | > th | dose independent | sin | 1 | NA |
| 338 | 85.78 | radiation | 10 | 4320 | < th | dose dependent | sin | 23 | NA |
| 339 | 85.78 | radiation | 20 | 4320 | < th | dose dependent | rect. | 12 | 4 |
| 349 | 85.79 | radiation | 20 | 4320 | < th | dose dependent | rect. | 8 | 17 |
| 355 | 85.79 | radiation | 10 | 4320 | < th | dose dependent | rect. | 7 | 22 |
| 367 | 85.81 | radiation | 20 | 4320 | < th | dose dependent | sin | 21 | NA |
| 430 | 85.92 | humidity | 80 | 4320 | < th | dose independent | sin | 4 | NA |
| 434 | 85.92 | humidity | 60 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 449 | 85.93 | radiation | 20 | 4320 | < th | dose dependent | rect. | 12 | 19 |
| 456 | 85.94 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 17 |
| 462 | 85.95 | humidity | 60 | 720 | > th | dose independent | rect. | 20 | 15 |
| 466 | 85.95 | humidity | 50 | 4320 | > th | dose dependent | rect. | 3 | 7 |
| 480 | 85.96 | humidity | 80 | 4320 | < th | dose independent | rect. | 23 | 15 |
| 510 | 85.99 | wind | 1 | 10 | < th | dose dependent | sin | 0 | NA |
| 520 | 86.00 | radiation | 20 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 521 | 86.00 | radiation | 1 | 4320 | > th | dose dependent | rect. | 14 | 2 |
| 562 | 86.03 | humidity | 90 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 566 | 86.03 | radiation | 10 | 4320 | < th | dose dependent | rect. | 12 | 23 |
| 577 | 86.05 | humidity | 90 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 595 | 86.07 | radiation | 10 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 603 | 86.07 | humidity | 80 | 270 | < th | dose dependent | rect. | 16 | 18 |
| 714 | 86.11 | radiation | 10 | 4320 | < th | dose dependent | no | NA | NA |
| 773 | 86.14 | humidity | 60 | 10 | > th | dose independent | sin | 8 | NA |
| 801 | 86.15 | radiation | 10 | 4320 | < th | dose dependent | rect. | 9 | 4 |
| 828 | 86.16 | humidity | 70 | 4320 | > th | dose dependent | rect. | 3 | 10 |
| 844 | 86.17 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 896 | 86.18 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 11 |
| 969 | 86.23 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 977 | 86.25 | humidity | 60 | 10 | < th | dose independent | sin | 9 | NA |
| 982 | 86.25 | humidity | 80 | 270 | < th | dose dependent | rect. | 18 | 16 |