Os02g0625300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoenolpyruvate carboxylase kinase.
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Os02g0625300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoenolpyruvate carboxylase kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.58 | 0.557 | 9.42 | 0.746 | 1.23 | -2.64 | -1.18 | 3.25 | 0.232 | 13.1 | 19.31 | 734 | 1.44 | -- |
| 148.26 | 0.567 | 9.49 | 0.047 | 1.12 | -2.5 | -0.788 | -- | 0.058 | 13.2 | 18.73 | 781 | 1.74 | -- |
| 145.08 | 0.561 | 9.45 | 0.525 | 1.18 | -2.69 | -- | 2.33 | 0.182 | 12.9 | 18.88 | 775 | 1.77 | -- |
| 148.89 | 0.568 | 9.48 | 0.178 | 1.44 | -3.13 | -- | -- | 0.0773 | 12.2 | 16.7 | 786 | 1.9 | -- |
| 176.51 | 0.619 | 9.46 | 0.658 | -- | -1.98 | -- | 1.95 | 0.136 | -- | 19.12 | 2378 | 4.98 | -- |
| 277.78 | 0.781 | 9.65 | -0.644 | 0.512 | -- | -1.16 | -- | -0.543 | 14.6 | -- | -- | -- | -- |
| 282.51 | 0.787 | 9.65 | -0.673 | 0.513 | -- | -- | -- | -0.549 | 14.8 | -- | -- | -- | -- |
| 180.35 | 0.625 | 9.53 | 0.096 | -- | -1.97 | -- | -- | -0.00285 | -- | 18.4 | 2420 | 5.43 | -- |
| 148.43 | 0.567 | 9.49 | -- | 1.39 | -2.92 | -- | -- | 0.0319 | 12.3 | 16.96 | 779 | 1.84 | -- |
| 297.73 | 0.806 | 9.65 | -0.695 | -- | -- | -- | -- | -0.562 | -- | -- | -- | -- | -- |
| 294.45 | 0.803 | 9.63 | -- | 0.526 | -- | -- | -- | -0.474 | 14.8 | -- | -- | -- | -- |
| 180.55 | 0.626 | 9.53 | -- | -- | -1.93 | -- | -- | -0.0199 | -- | 18.5 | 2419 | 5.43 | -- |
| 310.47 | 0.822 | 9.64 | -- | -- | -- | -- | -- | -0.485 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 2 | 139.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 9 | 142.62 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 44 | 148.27 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 60 | 149.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 69 | 150.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 83 | 151.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 398 | 165.50 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 533 | 170.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 544 | 171.27 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 556 | 171.37 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 615 | 172.48 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 695 | 173.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 743 | 174.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |