Os02g0625100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os02g0625100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 232.29 | 0.716 | 3.4 | 1.31 | 0.23 | 1.01 | -0.0637 | 0.504 | 0.104 | 6.88 | 22 | 1716 | -- | -- |
| 232.87 | 0.711 | 3.38 | 1.47 | 0.228 | 1 | -0.0218 | -- | 0.142 | 6.77 | 22.09 | 1720 | -- | -- |
| 232.28 | 0.71 | 3.4 | 1.31 | 0.229 | 1.01 | -- | 0.501 | 0.104 | 6.75 | 22.01 | 1719 | -- | -- |
| 232.87 | 0.711 | 3.38 | 1.47 | 0.228 | 1 | -- | -- | 0.142 | 6.71 | 22.1 | 1720 | -- | -- |
| 234.91 | 0.714 | 3.4 | 1.33 | -- | 1.02 | -- | 0.49 | 0.12 | -- | 22.1 | 1783 | -- | -- |
| 268.04 | 0.768 | 3.45 | 1.07 | 0.235 | -- | -0.0779 | -- | -0.185 | 6.99 | -- | -- | -- | -- |
| 268.05 | 0.767 | 3.45 | 1.07 | 0.236 | -- | -- | -- | -0.185 | 6.8 | -- | -- | -- | -- |
| 235.42 | 0.715 | 3.38 | 1.49 | -- | 1.01 | -- | -- | 0.157 | -- | 22.1 | 1844 | -- | -- |
| 279.56 | 0.783 | 3.44 | -- | 0.328 | 0.561 | -- | -- | -0.16 | 9.12 | 22.1 | 1720 | -- | -- |
| 270.95 | 0.769 | 3.46 | 1.07 | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
| 298.13 | 0.808 | 3.48 | -- | 0.249 | -- | -- | -- | -0.304 | 6.54 | -- | -- | -- | -- |
| 285.21 | 0.787 | 3.44 | -- | -- | 0.61 | -- | -- | -0.109 | -- | 22.43 | 1498 | -- | -- |
| 301.36 | 0.81 | 3.49 | -- | -- | -- | -- | -- | -0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 229.85 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 2 | 230.02 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 4 | 230.29 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 6 | 230.79 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 12 | 231.44 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 21 | 231.65 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 30 | 231.78 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 33 | 231.88 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 50 | 232.05 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 71 | 232.34 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 86 | 232.47 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 110 | 232.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 111 | 232.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 114 | 232.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 142 | 233.16 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 172 | 233.30 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 233 | 233.51 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 269 | 233.74 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 277 | 233.77 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 293 | 233.85 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 297 | 233.87 | wind | 5.0 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 304 | 233.90 | wind | 3.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 309 | 233.94 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 319 | 233.98 | wind | 5.0 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 322 | 233.99 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 324 | 234.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 379 | 234.22 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 390 | 234.24 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 397 | 234.29 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 402 | 234.31 | wind | 5.0 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 407 | 234.36 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 414 | 234.39 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 421 | 234.40 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 434 | 234.41 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 6 |
| 437 | 234.43 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 441 | 234.43 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 457 | 234.47 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 477 | 234.51 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 536 | 234.65 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 569 | 234.74 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 620 | 234.84 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 628 | 234.87 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 639 | 234.88 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 679 | 234.98 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 6 |
| 709 | 235.05 | wind | 3.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 752 | 235.14 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 807 | 235.26 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 833 | 235.35 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 840 | 235.38 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 850 | 235.39 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 878 | 235.45 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 898 | 235.48 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 925 | 235.53 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 945 | 235.58 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 973 | 235.62 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |