Os02g0625000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA photolyase) (Photoreactivating enzyme).
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Os02g0625000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA photolyase) (Photoreactivating enzyme).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.43 | 0.526 | 10.9 | -0.549 | 0.975 | 2.85 | -0.381 | 4.57 | 0.131 | 13.2 | 0.929 | 1412 | -- | -- |
| 131.12 | 0.533 | 10.9 | -0.202 | 0.943 | 1.89 | 0.105 | -- | 0.155 | 13.6 | 2.249 | 1388 | -- | -- |
| 125.91 | 0.523 | 10.9 | -0.561 | 1 | 2.88 | -- | 4.68 | 0.133 | 13.2 | 0.86 | 1416 | -- | -- |
| 128.83 | 0.529 | 10.8 | -0.208 | 0.967 | 1.9 | -- | -- | 0.198 | 13.4 | 2.558 | 1395 | -- | -- |
| 162.89 | 0.594 | 10.9 | -0.502 | -- | 3.33 | -- | 4.62 | 0.138 | -- | 1.1 | 1362 | -- | -- |
| 178.53 | 0.626 | 10.9 | -0.546 | 1.18 | -- | 0.136 | -- | -0.0486 | 13 | -- | -- | -- | -- |
| 178.6 | 0.626 | 10.9 | -0.541 | 1.18 | -- | -- | -- | -0.0479 | 13 | -- | -- | -- | -- |
| 165.51 | 0.599 | 10.8 | -0.225 | -- | 2.39 | -- | -- | 0.18 | -- | 2.871 | 1335 | -- | -- |
| 129.34 | 0.53 | 10.8 | -- | 0.941 | 1.99 | -- | -- | 0.241 | 13.3 | 2.517 | 1393 | -- | -- |
| 265.76 | 0.762 | 10.9 | -0.585 | -- | -- | -- | -- | -0.0707 | -- | -- | -- | -- | -- |
| 186.32 | 0.639 | 10.9 | -- | 1.19 | -- | -- | -- | 0.0123 | 13 | -- | -- | -- | -- |
| 164.88 | 0.598 | 10.8 | -- | -- | 2.66 | -- | -- | 0.257 | -- | 2.684 | 1335 | -- | -- |
| 274.8 | 0.774 | 10.9 | -- | -- | -- | -- | -- | -0.0058 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.07 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 3 | 124.29 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 8 | 124.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 9 | 124.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 15 | 124.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 16 | 124.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 64 | 125.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 78 | 126.21 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 96 | 126.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 106 | 126.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 117 | 126.65 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 145 | 126.91 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 150 | 126.96 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 153 | 126.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 214 | 127.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 218 | 127.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 248 | 127.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 252 | 127.85 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 263 | 127.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 267 | 127.88 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 376 | 128.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 396 | 128.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 412 | 128.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 19 |
| 423 | 129.04 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 447 | 129.18 | temperature | 20 | 14400 | > th | dose dependent | rect. | 3 | 2 |
| 477 | 129.36 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 505 | 129.51 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 516 | 129.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 19 |
| 559 | 129.66 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 564 | 129.67 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 573 | 129.72 | temperature | 25 | 1440 | > th | dose dependent | sin | 3 | NA |
| 588 | 129.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 593 | 129.79 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 8 |
| 594 | 129.79 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 10 |
| 614 | 129.84 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 622 | 129.85 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 658 | 129.94 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 676 | 129.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 691 | 129.99 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 876 | 130.36 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 901 | 130.41 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 934 | 130.45 | temperature | 25 | 14400 | > th | dose dependent | sin | 16 | NA |