Os02g0622300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0622300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.45 | 0.447 | 13.3 | -0.205 | 0.809 | 0.817 | 0.547 | -1.67 | -0.292 | 17.6 | 20.6 | 2721 | -- | -- |
| 95.3 | 0.455 | 13.2 | 0.103 | 0.8 | 1.06 | 0.698 | -- | -0.217 | 17.7 | 20.5 | 2698 | -- | -- |
| 91.15 | 0.445 | 13.3 | -0.216 | 0.811 | 0.821 | -- | -1.71 | -0.29 | 17.5 | 20.59 | 2720 | -- | -- |
| 95.41 | 0.455 | 13.2 | 0.0877 | 0.808 | 1.17 | -- | -- | -0.208 | 17.5 | 19.8 | 2647 | -- | -- |
| 125.24 | 0.521 | 13.3 | -0.252 | -- | 0.813 | -- | -1.77 | -0.318 | -- | 20.7 | 2940 | -- | -- |
| 119.9 | 0.513 | 13.2 | 0.695 | 0.766 | -- | 0.852 | -- | 0.0676 | 17.8 | -- | -- | -- | -- |
| 121.64 | 0.516 | 13.2 | 0.69 | 0.771 | -- | -- | -- | 0.0713 | 17.7 | -- | -- | -- | -- |
| 128.49 | 0.528 | 13.2 | 0.177 | -- | 1.06 | -- | -- | -0.195 | -- | 20.2 | 2027 | -- | -- |
| 95.53 | 0.455 | 13.2 | -- | 0.811 | 1.21 | -- | -- | -0.221 | 17.5 | 19.7 | 2684 | -- | -- |
| 152.51 | 0.577 | 13.1 | 0.666 | -- | -- | -- | -- | 0.053 | -- | -- | -- | -- | -- |
| 134.18 | 0.542 | 13.2 | -- | 0.76 | -- | -- | -- | -0.0055 | 17.7 | -- | -- | -- | -- |
| 128.46 | 0.528 | 13.2 | -- | -- | 1.23 | -- | -- | -0.241 | -- | 19.3 | 3392 | -- | -- |
| 164.2 | 0.598 | 13.2 | -- | -- | -- | -- | -- | -0.0208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 2 | 89.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 3 | 89.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 7 | 89.90 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 9 | 89.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 36 | 90.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 43 | 90.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 62 | 90.68 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 66 | 90.71 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 98 | 91.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 113 | 91.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 127 | 91.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 189 | 91.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 500 | 92.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 509 | 92.76 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 536 | 92.84 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 588 | 92.98 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 607 | 93.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 616 | 93.08 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 638 | 93.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 647 | 93.15 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 680 | 93.24 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 687 | 93.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 726 | 93.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 729 | 93.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 749 | 93.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 755 | 93.40 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 765 | 93.42 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 854 | 93.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 903 | 93.76 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 935 | 93.84 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 968 | 93.89 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 991 | 93.93 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 997 | 93.94 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 13 |