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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0621100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Su(VAR)3-9-related protein 4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.91 (0.0381) R2 : 0.922
β1 : 0.581 (0.199) R2dD : 0.00335 R2D : -0.273
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.01 (0.155) R2dE : 0.144 R2E : -0.176
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.81 (0.727) R2dD*E : 0.0436 R2D*E : -0.234
γ1 : 5.32 (0.0786) R2dN8 : 1.05 R2N8 : 0.72
σ : 0.688
deviance : 218.48
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C
peak time of C : --
E
wheather : radiation
threshold : 0.3852
memory length : 4306
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 11.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.82 0.685 5.89 0.538 0.348 3.94 1.4 7.63 5.33 9.12 0.3594 4321 18.2 11.1
237.64 0.718 5.89 2.19 0.355 3.32 1.72 -- 5.62 9.54 0.6458 4319 17.9 11.6
217.25 0.686 5.89 0.56 0.21 3.97 -- 7.75 5.33 9.07 0.367 4312 18.2 11.1
238.51 0.719 5.89 2.4 0.291 3.35 -- -- 5.72 9.72 0.66 4316 17.9 11.7
218.48 0.688 5.91 0.581 -- 4.01 -- 7.81 5.32 -- 0.3852 4306 18.2 11.1
528.37 1.08 6 2.91 0.403 -- 1.09 -- 5.35 10.8 -- -- -- --
532.65 1.08 6 2.96 0.408 -- -- -- 5.35 11.9 -- -- -- --
240.36 0.722 5.91 2.33 -- 3.42 -- -- 5.71 -- 0.7243 4301 17.9 11.7
354.72 0.877 5.89 -- 0.21 4.13 -- -- 5.44 9.63 2.29 4311 17.6 11.8
543.12 1.09 6.01 2.95 -- -- -- -- 5.35 -- -- -- -- --
763.72 1.29 6.08 -- 0.374 -- -- -- 5.02 11.4 -- -- -- --
352.02 0.874 5.89 -- -- 4.47 -- -- 5.46 -- 2.46 4312 17.6 11.8
772.47 1.3 6.09 -- -- -- -- -- 5.02 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 218.57 humidity 90 43200 > th dose dependent rect. 5 1
2 218.71 radiation 10 4320 < th dose independent rect. 16 14
3 219.45 radiation 1 14400 < th dose independent rect. 18 2
4 219.50 radiation 1 14400 < th dose independent rect. 18 6
5 219.53 radiation 1 14400 < th dose independent rect. 18 4
7 219.54 radiation 1 14400 < th dose independent rect. 18 9
15 220.99 radiation 1 14400 > th dose dependent rect. 18 1
25 221.11 humidity 90 43200 > th dose independent rect. 22 1
26 221.89 radiation 1 14400 < th dose dependent rect. 18 2
27 221.93 radiation 1 14400 < th dose dependent rect. 18 4
28 221.94 radiation 10 4320 < th dose independent rect. 16 3
31 221.95 radiation 10 4320 < th dose independent rect. 16 9
37 222.05 radiation 10 4320 < th dose independent rect. 16 7
42 222.22 humidity 90 43200 < th dose independent rect. 19 5
45 222.69 humidity 90 43200 < th dose independent rect. 22 1
46 222.75 radiation 1 14400 < th dose dependent rect. 18 9
60 224.98 humidity 90 43200 > th dose dependent rect. 4 3
65 225.51 radiation 1 14400 > th dose independent rect. 18 1
91 226.48 humidity 90 43200 > th dose independent rect. 5 1
127 230.00 humidity 90 43200 > th dose independent rect. 19 17
132 230.31 radiation 30 14400 > th dose dependent rect. 15 17
144 230.90 radiation 10 43200 < th dose dependent rect. 4 1
221 233.04 humidity 90 43200 < th dose independent rect. 17 19
238 233.33 radiation 30 14400 < th dose independent rect. 15 17
253 233.90 humidity 90 43200 < th dose independent rect. 5 22
266 234.21 humidity 90 43200 > th dose dependent sin 5 NA
270 234.26 humidity 90 43200 > th dose dependent rect. 19 17
293 234.73 radiation 20 43200 < th dose dependent rect. 22 7
309 235.07 humidity 90 43200 > th dose dependent rect. 21 16
329 235.43 humidity 90 43200 > th dose independent rect. 3 23
342 235.63 humidity 90 43200 > th dose independent rect. 5 22
343 235.64 humidity 90 43200 < th dose independent rect. 8 19
347 235.72 humidity 90 43200 < th dose independent rect. 9 17
388 236.21 humidity 90 43200 < th dose independent sin 17 NA
438 236.84 humidity 90 43200 > th dose independent no NA NA
443 236.92 radiation 20 4320 < th dose dependent rect. 18 2
447 236.98 humidity 90 43200 > th dose independent rect. 8 23
471 237.26 humidity 90 43200 > th dose independent rect. 11 23
485 237.43 humidity 90 43200 > th dose independent sin 6 NA
490 237.47 humidity 90 43200 > th dose dependent rect. 3 23
511 237.73 humidity 90 43200 > th dose dependent rect. 21 2
545 238.04 humidity 90 43200 > th dose dependent rect. 24 23
553 238.13 humidity 90 43200 > th dose dependent rect. 21 23
554 238.16 humidity 90 43200 < th dose independent no NA NA
557 238.18 humidity 90 43200 > th dose independent rect. 24 23
563 238.25 radiation 30 14400 > th dose independent rect. 16 16
576 238.41 humidity 90 43200 > th dose dependent no NA NA
581 238.47 humidity 90 43200 > th dose dependent rect. 11 23
585 238.56 humidity 90 43200 < th dose independent rect. 8 23
595 238.61 humidity 90 43200 > th dose dependent rect. 8 23
613 238.77 humidity 90 43200 > th dose independent rect. 9 17
665 239.22 humidity 90 43200 < th dose independent rect. 22 23
675 239.30 radiation 10 4320 < th dose independent sin 13 NA
690 239.51 humidity 90 43200 > th dose independent rect. 3 8
717 239.78 humidity 90 43200 > th dose independent sin 16 NA
755 240.30 radiation 1 14400 < th dose dependent rect. 18 20
762 240.38 atmosphere 1005 43200 > th dose independent rect. 16 1
770 240.52 radiation 1 4320 > th dose dependent rect. 16 15
784 240.75 humidity 90 43200 > th dose dependent rect. 19 5
838 241.44 radiation 30 43200 > th dose dependent rect. 7 1
855 241.46 radiation 40 43200 < th dose independent rect. 22 10
860 241.57 radiation 40 43200 < th dose independent rect. 24 8
876 241.79 radiation 40 43200 < th dose independent rect. 18 14
878 241.83 radiation 40 43200 < th dose independent rect. 6 2
882 241.90 radiation 40 43200 < th dose independent rect. 4 4
892 242.01 humidity 90 43200 > th dose independent rect. 4 4
895 242.07 atmosphere 1005 43200 < th dose independent rect. 16 1
911 242.37 radiation 10 43200 > th dose independent rect. 5 1
934 242.55 wind 1 43200 < th dose dependent rect. 19 2
948 242.72 humidity 80 43200 > th dose dependent rect. 18 1