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Os02g0620200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0257) R2 : 0.774
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.24 (0.0626) R2dC : 0.637 R2C : 0.678
β3 : -1.67 (0.148) R2dE : 0.079 R2E : 0.12
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.354 (0.0542) R2dN8 : 0.0255 R2N8 : 0.0077
σ : 0.481
deviance : 106.67
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C
peak time of C : 10.2
E
wheather : radiation
threshold : 2.188
memory length : 1098
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 2.17

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.81 0.467 11.7 -0.85 2.25 -11.3 0.515 -23 -0.38 10.2 1.016 1139 9.15 4.12
142.54 0.56 11.9 -0.0296 2.31 -0.643 0.163 -- -0.281 10.2 0.01571 76 10.3 3.04
99.86 0.465 11.7 -0.818 2.24 -11.2 -- -23 -0.375 10.2 0.9735 1139 9.15 4.13
112.19 0.493 11.9 0.0229 2.32 -1.07 -- -- -0.285 10.3 2.743 1149 10.7 2.47
401.11 0.933 11.8 -0.965 -- -11.4 -- -22.4 -0.406 -- 1.144 1023 9.26 4.53
142.95 0.561 11.9 -0.0219 2.3 -- 0.184 -- -0.278 10.2 -- -- -- --
143.08 0.56 11.9 -0.0146 2.3 -- -- -- -0.277 10.2 -- -- -- --
141.43 0.554 12 0.022 -- -2.09 -- -- -0.186 -- 88.32 1017 8.55 10.8
106.67 0.481 11.9 -- 2.24 -1.67 -- -- -0.354 10.2 2.188 1098 11 2.17
464.99 1.01 12 -0.0482 -- -- -- -- -0.282 -- -- -- -- --
143.09 0.56 11.9 -- 2.3 -- -- -- -0.276 10.2 -- -- -- --
140.62 0.552 12 -- -- -2.08 -- -- -0.273 -- 84.47 1035 8.36 10.9
465.05 1.01 12 -- -- -- -- -- -0.277 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 104.57 radiation 1 1440 < th dose independent rect. 9 4
2 104.57 radiation 1 1440 < th dose dependent rect. 9 4
4 104.59 radiation 1 1440 > th dose independent rect. 9 5
6 105.04 radiation 1 1440 > th dose independent rect. 13 1
27 106.27 radiation 1 1440 < th dose independent rect. 13 1
28 106.27 radiation 1 1440 < th dose dependent rect. 13 1
76 109.41 humidity 80 1440 > th dose independent rect. 11 3
77 109.57 radiation 1 1440 > th dose independent rect. 9 1
79 110.03 humidity 80 1440 < th dose independent rect. 11 3
87 110.38 humidity 80 1440 < th dose independent rect. 8 6
93 111.79 radiation 1 720 > th dose independent rect. 11 19
108 112.40 humidity 80 1440 > th dose independent rect. 8 7
113 112.45 humidity 80 1440 > th dose independent rect. 7 9
114 112.49 radiation 10 1440 < th dose independent rect. 21 8
126 112.83 radiation 1 720 < th dose independent rect. 10 17
135 112.95 radiation 1 720 < th dose independent rect. 11 8
139 112.98 humidity 60 14400 > th dose independent rect. 21 11
145 113.14 radiation 1 720 < th dose dependent rect. 10 17
165 113.43 humidity 60 14400 > th dose independent rect. 23 9
172 113.50 radiation 10 1440 < th dose independent rect. 23 6
197 113.88 radiation 1 720 > th dose independent rect. 11 8
218 114.07 radiation 10 1440 < th dose dependent rect. 21 8
227 114.17 humidity 80 1440 < th dose independent sin 2 NA
230 114.17 humidity 80 720 > th dose independent rect. 11 9
231 114.18 humidity 60 14400 < th dose independent rect. 6 1
233 114.18 humidity 60 14400 < th dose independent rect. 20 1
235 114.18 radiation 20 14400 > th dose independent rect. 17 1
286 114.18 humidity 60 14400 < th dose dependent rect. 6 1
288 114.18 humidity 60 14400 < th dose dependent rect. 20 1
290 114.18 radiation 20 14400 > th dose dependent rect. 17 1
380 114.64 humidity 70 1440 > th dose dependent rect. 11 3
400 114.78 radiation 10 1440 < th dose dependent rect. 23 6
404 114.81 humidity 80 1440 > th dose independent sin 2 NA
409 114.84 humidity 80 720 < th dose independent rect. 11 10
541 115.91 humidity 90 1440 < th dose dependent rect. 11 3
545 115.93 humidity 80 720 > th dose independent sin 21 NA
581 116.19 humidity 80 720 < th dose independent sin 22 NA
599 116.30 radiation 1 720 < th dose independent sin 22 NA
640 116.48 humidity 60 14400 > th dose independent rect. 7 1
663 116.56 humidity 80 720 > th dose independent rect. 24 21
667 116.59 radiation 1 1440 > th dose independent rect. 4 1
687 116.59 radiation 1 1440 > th dose dependent rect. 4 1
737 116.85 humidity 80 720 < th dose independent rect. 6 15
764 116.91 radiation 10 1440 < th dose dependent sin 18 NA
769 116.93 radiation 1 720 < th dose dependent rect. 23 19
792 117.04 radiation 1 720 > th dose independent sin 22 NA
797 117.05 humidity 60 720 > th dose dependent rect. 9 18
810 117.10 humidity 80 720 > th dose independent rect. 8 19
857 117.25 radiation 1 720 < th dose dependent sin 22 NA
935 117.54 radiation 1 720 < th dose independent rect. 23 19
936 117.54 humidity 70 720 > th dose dependent rect. 11 10