FiT-DB / Search/ Help/ Sample detail

Os02g0619600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.38 (0.0374) R2 : 0.83
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.98 (0.109) R2dC : 0.372 R2C : 0.602
β3 : -2.86 (0.156) R2dE : 0.168 R2E : 0.426
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.758 (0.0791) R2dN8 : 0.0444 R2N8 : 0.0446
σ : 0.701
deviance : 226.53
__
_____
C
peak time of C : 8.34
E
wheather : temperature
threshold : 9.642
memory length : 263
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.33
open length of G : 21.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.43 0.683 7.32 -0.0161 3.19 -2.65 1.19 3.63 -0.669 8.14 10.08 248 5.27 21.8
225.24 0.699 7.32 -0.281 3.14 -2.69 1.24 -- -0.693 8.23 7.754 232 5.32 21.7
214.81 0.683 7.33 -0.04 3.16 -2.75 -- 3.2 -0.666 8.21 10.68 235 5.33 21.6
223.21 0.696 7.34 -0.399 3.14 -2.63 -- -- -0.748 8.18 9.37 246 5.45 21.4
281.33 0.781 7.36 0.198 -- -5.74 -- 2.68 -0.412 -- 4.562 541 5.82 18.3
297.28 0.808 7.41 -0.901 4.23 -- 0.757 -- -1.05 7.31 -- -- -- --
298.82 0.81 7.41 -0.885 4.23 -- -- -- -1.05 7.3 -- -- -- --
244.69 0.729 7.48 -0.422 -- -5.1 -- -- -0.861 -- -4.996 596 6.82 14.9
226.53 0.701 7.38 -- 2.98 -2.86 -- -- -0.758 8.34 9.642 263 5.33 21.2
1250.21 1.65 7.51 -0.812 -- -- -- -- -0.982 -- -- -- -- --
319.47 0.836 7.39 -- 4.23 -- -- -- -0.955 7.31 -- -- -- --
249.54 0.736 7.48 -- -- -5.18 -- -- -0.835 -- -2.515 583 6.87 15.1
1267.6 1.66 7.49 -- -- -- -- -- -0.892 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.75 temperature 10 270 > th dose dependent rect. 5 22
16 221.26 temperature 15 10 > th dose dependent rect. 7 22
56 229.05 temperature 30 270 < th dose dependent rect. 9 22
61 229.85 humidity 60 43200 < th dose dependent rect. 8 1
65 230.08 temperature 10 270 > th dose dependent rect. 16 23
68 230.22 temperature 20 4320 < th dose dependent rect. 23 2
71 230.72 temperature 20 4320 < th dose dependent rect. 23 5
104 231.40 temperature 20 4320 < th dose dependent rect. 3 1
115 231.61 humidity 60 43200 < th dose independent rect. 8 1
129 231.75 humidity 60 43200 < th dose dependent rect. 22 11
181 232.58 temperature 20 4320 < th dose dependent sin 10 NA
192 232.73 temperature 20 4320 < th dose independent rect. 22 1
199 232.84 humidity 60 43200 > th dose independent rect. 8 1
213 233.05 temperature 20 4320 < th dose independent rect. 18 7
216 233.09 humidity 60 43200 < th dose dependent rect. 20 14
234 233.32 humidity 50 43200 > th dose independent rect. 7 3
253 233.52 wind 7 43200 > th dose dependent rect. 8 9
271 233.69 wind 9 43200 < th dose independent rect. 8 8
274 233.71 wind 9 43200 < th dose independent rect. 3 14
278 233.74 wind 7 43200 > th dose dependent rect. 4 13
285 233.77 wind 9 43200 > th dose independent rect. 8 8
288 233.78 wind 9 43200 < th dose independent rect. 7 10
289 233.79 humidity 50 43200 < th dose independent sin 7 NA
292 233.81 humidity 50 43200 > th dose independent sin 7 NA
312 233.92 temperature 20 4320 < th dose independent sin 15 NA
317 233.92 wind 7 43200 > th dose dependent rect. 24 17
324 233.96 wind 7 43200 > th dose independent rect. 22 18
332 234.02 temperature 20 4320 > th dose independent rect. 18 7
337 234.03 humidity 50 43200 < th dose independent rect. 5 8
339 234.03 wind 9 43200 < th dose independent rect. 22 19
340 234.03 wind 7 43200 > th dose dependent sin 0 NA
344 234.04 wind 7 43200 > th dose dependent rect. 9 6
347 234.05 temperature 20 4320 > th dose independent rect. 17 9
349 234.05 wind 7 43200 > th dose dependent rect. 21 20
353 234.08 temperature 20 4320 > th dose independent rect. 22 1
357 234.09 wind 9 43200 < th dose independent sin 0 NA
361 234.09 humidity 50 43200 < th dose independent rect. 21 16
371 234.12 temperature 30 90 < th dose dependent rect. 15 16
389 234.17 atmosphere 1015 43200 < th dose independent rect. 12 1
395 234.18 wind 9 43200 < th dose independent rect. 3 17
407 234.21 humidity 50 43200 > th dose independent rect. 20 18
430 234.26 humidity 50 43200 < th dose dependent sin 8 NA
437 234.30 wind 9 43200 > th dose independent sin 0 NA
446 234.31 atmosphere 1015 43200 < th dose independent rect. 12 10
450 234.31 humidity 50 43200 > th dose independent rect. 21 13
460 234.33 wind 7 43200 > th dose independent sin 4 NA
465 234.33 wind 9 43200 < th dose independent rect. 18 23
477 234.35 wind 9 43200 < th dose independent rect. 22 22
481 234.36 humidity 80 43200 < th dose independent rect. 6 1
483 234.36 wind 9 43200 > th dose independent rect. 4 13
494 234.38 atmosphere 1015 43200 > th dose independent rect. 12 1
503 234.40 humidity 50 43200 > th dose independent rect. 6 7
521 234.42 humidity 50 43200 > th dose independent rect. 24 14
534 234.43 humidity 50 43200 < th dose dependent rect. 6 7
568 234.46 humidity 50 43200 < th dose dependent rect. 21 16
570 234.47 wind 9 43200 < th dose independent rect. 7 13
577 234.48 wind 7 43200 < th dose independent sin 3 NA
603 234.49 wind 9 43200 > th dose independent rect. 4 16
612 234.50 wind 9 43200 > th dose independent rect. 24 20
620 234.51 wind 9 43200 > th dose independent rect. 7 13
648 234.54 humidity 50 43200 > th dose independent rect. 24 10
669 234.58 wind 1 43200 > th dose dependent rect. 10 4
687 234.61 temperature 20 4320 > th dose independent sin 15 NA
695 234.62 wind 9 43200 > th dose independent rect. 9 23
714 234.64 wind 7 43200 > th dose dependent rect. 19 22
715 234.65 humidity 80 43200 > th dose independent rect. 6 1
739 234.68 wind 9 43200 > th dose independent rect. 18 23
749 234.69 wind 9 43200 > th dose independent rect. 21 23
766 234.72 temperature 20 4320 < th dose independent rect. 13 18
786 234.74 wind 9 43200 < th dose independent rect. 8 22
792 234.76 atmosphere 1015 43200 > th dose independent rect. 12 10
797 234.77 atmosphere 1015 43200 < th dose independent rect. 16 6
848 234.83 wind 7 43200 > th dose dependent rect. 9 23
849 234.84 wind 3 43200 > th dose independent rect. 11 3
883 234.88 wind 9 43200 < th dose dependent rect. 10 4
904 234.90 wind 7 43200 > th dose independent rect. 4 10
909 234.90 wind 9 43200 < th dose independent rect. 3 20
912 234.90 wind 1 43200 > th dose dependent rect. 6 9
921 234.91 wind 1 43200 > th dose dependent rect. 8 7