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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0618700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lung seven transmembrane receptor family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.032) R2 : 0.135
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.942 (0.112) R2dE : 0.139 R2E : 0.121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.159 (0.0684) R2dN8 : 0.0141 R2N8 : -0.00402
σ : 0.599
deviance : 165.16
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 998.4
memory length : 12241
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.1 0.604 2.96 0.0837 0.153 0.839 -0.334 2.06 0.141 9.5 1000 5594 -- --
163.48 0.595 2.97 -0.042 0.171 0.971 -0.268 -- 0.16 9.52 998.9 11731 -- --
165.49 0.599 2.96 0.0797 0.156 0.834 -- 2.05 0.139 10 1001 5572 -- --
163.79 0.596 2.97 -0.054 0.154 0.977 -- -- 0.155 9.67 998.9 11771 -- --
166.92 0.602 2.96 0.0718 -- 0.845 -- 2.06 0.139 -- 1000 5588 -- --
188.28 0.643 2.99 0.153 0.161 -- -0.322 -- 0.0651 9.63 -- -- -- --
188.65 0.643 2.99 0.141 0.162 -- -- -- 0.065 10 -- -- -- --
165.11 0.598 2.98 -0.0449 -- 0.952 -- -- 0.158 -- 998.4 12235 -- --
163.86 0.596 2.97 -- 0.153 0.964 -- -- 0.159 9.71 998.8 11770 -- --
190.23 0.644 3 0.14 -- -- -- -- 0.0649 -- -- -- -- --
189.18 0.643 3 -- 0.162 -- -- -- 0.0492 9.93 -- -- -- --
165.16 0.599 2.98 -- -- 0.942 -- -- 0.159 -- 998.4 12241 -- --
190.75 0.645 3 -- -- -- -- -- 0.0494 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.05 wind 5.0 4320 > th dose independent rect. 20 2
2 152.66 wind 5.0 4320 < th dose independent rect. 20 2
4 153.25 wind 5.0 4320 > th dose dependent rect. 20 4
23 155.96 wind 7.0 4320 < th dose independent rect. 19 8
24 156.11 wind 7.0 4320 < th dose independent rect. 19 6
30 156.57 wind 7.0 4320 > th dose independent rect. 20 5
31 156.61 wind 7.0 4320 > th dose independent rect. 19 8
132 159.02 atmosphere 995.0 14400 > th dose independent rect. 10 3
133 159.03 atmosphere 995.0 14400 > th dose independent rect. 12 1
188 160.53 atmosphere 995.0 14400 < th dose independent rect. 15 4
233 160.66 atmosphere 995.0 14400 < th dose dependent rect. 15 4
238 160.71 atmosphere 995.0 14400 > th dose independent rect. 12 9
240 160.72 atmosphere 995.0 14400 > th dose independent rect. 12 7
246 160.74 precipitation 0.1 14400 > th dose dependent rect. 20 1
324 160.90 atmosphere 995.0 14400 < th dose dependent rect. 16 1
347 161.00 atmosphere 995.0 14400 > th dose independent rect. 14 5
351 161.02 atmosphere 995.0 14400 > th dose independent rect. 15 2
395 161.40 atmosphere 995.0 14400 < th dose dependent rect. 4 12
396 161.43 humidity 50.0 1440 > th dose dependent rect. 2 2
408 161.59 radiation 1.0 14400 < th dose dependent rect. 20 8
424 161.72 atmosphere 995.0 14400 > th dose independent rect. 18 1
439 161.82 atmosphere 995.0 14400 > th dose independent rect. 4 11
457 161.96 atmosphere 995.0 14400 > th dose independent rect. 24 16
485 162.06 atmosphere 995.0 14400 > th dose independent rect. 19 21
491 162.11 atmosphere 995.0 14400 < th dose dependent sin 1 NA
501 162.28 atmosphere 995.0 14400 > th dose independent sin 4 NA
508 162.38 atmosphere 1005.0 14400 < th dose independent rect. 23 1
519 162.41 atmosphere 995.0 14400 < th dose dependent rect. 14 10
530 162.42 atmosphere 995.0 14400 < th dose dependent sin 20 NA
531 162.42 atmosphere 995.0 14400 < th dose dependent rect. 4 19
547 162.46 atmosphere 995.0 14400 < th dose independent sin 4 NA
630 162.82 radiation 1.0 14400 < th dose dependent rect. 23 1
637 162.85 atmosphere 1005.0 14400 > th dose independent rect. 23 1
638 162.85 atmosphere 1005.0 14400 < th dose independent rect. 22 3
661 162.96 atmosphere 995.0 14400 > th dose independent rect. 10 21
665 162.97 atmosphere 995.0 14400 > th dose independent no NA NA
666 162.97 atmosphere 995.0 14400 > th dose independent rect. 12 19
675 162.97 atmosphere 995.0 14400 > th dose independent rect. 4 23
680 162.97 atmosphere 995.0 14400 > th dose independent rect. 12 23
697 162.98 atmosphere 995.0 14400 > th dose independent rect. 2 23
702 162.98 atmosphere 995.0 14400 > th dose independent rect. 14 23
785 163.11 atmosphere 995.0 14400 < th dose independent no NA NA
786 163.11 atmosphere 995.0 14400 < th dose independent rect. 14 15
828 163.11 atmosphere 995.0 14400 < th dose independent rect. 1 23
877 163.13 atmosphere 995.0 14400 > th dose independent rect. 14 21
934 163.18 radiation 1.0 14400 < th dose dependent rect. 23 3
970 163.26 radiation 1.0 14400 < th dose dependent rect. 23 5
982 163.34 atmosphere 995.0 14400 > th dose independent sin 17 NA