Os02g0618400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Snapdragon myb protein 305 homolog.
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Os02g0618400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Snapdragon myb protein 305 homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 549.03 | 1.1 | 5.95 | -4.72 | 1.19 | 3.8 | -2.33 | -10.8 | -0.745 | 22.4 | 23.77 | 1497 | 16.3 | 3.74 |
| 567.29 | 1.11 | 5.86 | -2.9 | 1.18 | 4.14 | -2.24 | -- | -1 | 22.5 | 18.41 | 8838 | 15.1 | 4.13 |
| 569.45 | 1.11 | 5.96 | -4.74 | 1.19 | 3.73 | -- | -10.8 | -0.759 | 22.5 | 23.51 | 1490 | 16.3 | 3.91 |
| 585.99 | 1.13 | 5.83 | -2.8 | 1.12 | 4.31 | -- | -- | -0.963 | 22.7 | 18.17 | 8844 | 15.5 | 2.97 |
| 589.5 | 1.13 | 5.9 | -4.4 | -- | 4.14 | -- | -10.2 | -0.614 | -- | 22.35 | 2220 | 14.9 | 3.35 |
| 932.04 | 1.43 | 5.55 | -0.935 | 1.35 | -- | -2.29 | -- | 0.401 | 22.2 | -- | -- | -- | -- |
| 952.56 | 1.45 | 5.55 | -0.848 | 1.36 | -- | -- | -- | 0.404 | 22.5 | -- | -- | -- | -- |
| 610.99 | 1.15 | 5.81 | -2.78 | -- | 4.74 | -- | -- | -0.908 | -- | 16.02 | 8004 | 14.8 | 2.76 |
| 701.18 | 1.23 | 5.83 | -- | 1.24 | 2.84 | -- | -- | -0.659 | 22.2 | 24.9 | 8855 | 16.6 | 1.87 |
| 1066.32 | 1.53 | 5.51 | -0.825 | -- | -- | -- | -- | 0.409 | -- | -- | -- | -- | -- |
| 971.53 | 1.46 | 5.53 | -- | 1.36 | -- | -- | -- | 0.498 | 22.4 | -- | -- | -- | -- |
| 772.2 | 1.29 | 5.79 | -- | -- | 2.63 | -- | -- | -0.516 | -- | 24.52 | 9368 | 17 | 0.865 |
| 1084.28 | 1.54 | 5.49 | -- | -- | -- | -- | -- | 0.501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 519.15 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 519.18 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 5 | 540.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 6 | 541.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 7 | 541.76 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 14 | 546.25 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 17 | 547.71 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 21 | 549.06 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 23 | 549.55 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 24 | 549.61 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 25 | 549.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 26 | 549.63 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 44 | 551.47 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 58 | 552.12 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 59 | 552.14 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 78 | 553.74 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 82 | 554.11 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 86 | 554.84 | wind | 5 | 43200 | > th | dose dependent | sin | 23 | NA |
| 103 | 555.69 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 117 | 556.55 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 149 | 558.02 | wind | 7 | 43200 | < th | dose independent | sin | 1 | NA |
| 165 | 558.95 | wind | 7 | 43200 | > th | dose independent | sin | 1 | NA |
| 171 | 559.28 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 235 | 562.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 4 |
| 241 | 563.02 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 262 | 563.84 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 266 | 563.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 290 | 564.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 306 | 565.37 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 327 | 566.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 440 | 569.02 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 466 | 569.63 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 471 | 569.72 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 490 | 570.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 556 | 571.02 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 602 | 571.98 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 604 | 572.02 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 623 | 572.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 638 | 572.61 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 740 | 574.46 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 782 | 575.17 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 787 | 575.20 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 788 | 575.21 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 791 | 575.23 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 821 | 575.45 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 852 | 575.97 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 918 | 576.96 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |