Os02g0617800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os02g0617800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.85 | 0.525 | 13.4 | -1.95 | 1.88 | -1.53 | 0.794 | 0.931 | 0.16 | 2.01 | 1.347 | 1438 | -- | -- |
| 125.4 | 0.522 | 13.3 | -1.86 | 1.86 | -1.7 | 0.76 | -- | 0.158 | 2.03 | 1.216 | 1434 | -- | -- |
| 126.86 | 0.525 | 13.4 | -1.97 | 1.92 | -1.54 | -- | 1.18 | 0.166 | 1.94 | 1.84 | 1450 | -- | -- |
| 127.76 | 0.526 | 13.3 | -1.88 | 1.86 | -1.73 | -- | -- | 0.159 | 2.01 | 1.251 | 1436 | -- | -- |
| 261.52 | 0.757 | 13.3 | -1.38 | -- | 1.01 | -- | 0.362 | 0.455 | -- | 1.84 | 1450 | -- | -- |
| 158.23 | 0.59 | 13.3 | -1.45 | 1.88 | -- | 0.977 | -- | 0.399 | 2.04 | -- | -- | -- | -- |
| 161.86 | 0.596 | 13.3 | -1.48 | 1.88 | -- | -- | -- | 0.393 | 2.03 | -- | -- | -- | -- |
| 184.8 | 0.633 | 13.3 | -1.44 | -- | 1.52 | -- | -- | 0.465 | -- | 9.759 | 264 | -- | -- |
| 207.53 | 0.671 | 13.3 | -- | 1.8 | -0.612 | -- | -- | 0.457 | 2 | 8.522 | 1407 | -- | -- |
| 373.35 | 0.903 | 13.3 | -1.4 | -- | -- | -- | -- | 0.437 | -- | -- | -- | -- | -- |
| 219.27 | 0.693 | 13.3 | -- | 1.85 | -- | -- | -- | 0.558 | 2.01 | -- | -- | -- | -- |
| 236.78 | 0.717 | 13.2 | -- | -- | 1.62 | -- | -- | 0.643 | -- | 15.68 | 257 | -- | -- |
| 424.89 | 0.962 | 13.2 | -- | -- | -- | -- | -- | 0.592 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.19 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 6 | 118.75 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 16 | 119.81 | humidity | 90 | 720 | > th | dose dependent | sin | 19 | NA |
| 23 | 120.33 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 29 | 120.77 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 31 | 120.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 41 | 121.28 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 42 | 121.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 52 | 122.00 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 75 | 122.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 76 | 122.22 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 90 | 122.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 110 | 122.53 | radiation | 1 | 1440 | > th | dose independent | sin | 17 | NA |
| 127 | 122.71 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 141 | 122.74 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 153 | 122.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 166 | 122.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 181 | 122.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 186 | 122.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 217 | 123.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 224 | 123.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 235 | 123.47 | humidity | 90 | 720 | > th | dose independent | rect. | 10 | 14 |
| 296 | 123.91 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 320 | 124.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 328 | 124.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 396 | 124.47 | humidity | 90 | 720 | > th | dose independent | rect. | 15 | 9 |
| 408 | 124.65 | humidity | 90 | 720 | > th | dose independent | rect. | 17 | 7 |
| 414 | 124.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 437 | 125.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 444 | 125.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 447 | 125.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 453 | 125.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 465 | 125.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 468 | 125.20 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 471 | 125.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 496 | 125.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 499 | 125.28 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 7 |
| 506 | 125.31 | humidity | 90 | 720 | > th | dose independent | rect. | 5 | 19 |
| 513 | 125.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 521 | 125.47 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 2 |
| 525 | 125.53 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 4 |
| 538 | 125.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 542 | 125.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 551 | 125.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 555 | 125.81 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 565 | 125.82 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 567 | 125.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 571 | 125.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 576 | 125.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 602 | 125.89 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 652 | 125.90 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 654 | 125.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 682 | 125.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 685 | 125.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 722 | 126.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 725 | 126.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 728 | 126.27 | humidity | 90 | 720 | > th | dose independent | sin | 18 | NA |
| 746 | 126.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 13 |
| 761 | 126.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 771 | 126.58 | humidity | 90 | 720 | < th | dose independent | rect. | 15 | 9 |
| 816 | 126.76 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 817 | 126.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 819 | 126.78 | humidity | 80 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 821 | 126.79 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 843 | 126.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 17 |
| 862 | 127.02 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 929 | 127.38 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 939 | 127.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 967 | 127.66 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 974 | 127.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 996 | 127.78 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 19 |