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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0617400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipolytic enzyme, G-D-S-L family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0294) R2 : 0.208
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.808 (0.0763) R2dE : 0.208 R2E : 0.208
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00082 (0.0636) R2dN8 : 4.18e-07 R2N8 : -0.000131
σ : 0.548
deviance : 138.66
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 31.6
memory length : 1317
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
131.2 0.538 3.32 -1.91 0.164 1.93 0.0378 -9.44 -0.0261 8.11 31.37 1321 -- --
135.26 0.542 3.13 -0.339 0.138 0.854 -0.154 -- -0.00194 8.49 32.19 1444 -- --
131.19 0.533 3.31 -1.85 0.161 1.89 -- -9.13 -0.0272 8.05 31.65 1345 -- --
134.65 0.54 3.13 -0.332 0.148 0.861 -- -- -0.0136 8.12 31.43 1306 -- --
132.6 0.536 3.32 -1.84 -- 1.89 -- -9.15 -0.0283 -- 31.87 1363 -- --
170.55 0.612 3.17 -0.117 0.162 -- 0.383 -- -0.188 4.82 -- -- -- --
170.88 0.612 3.17 -0.118 0.169 -- -- -- -0.19 5.5 -- -- -- --
135.79 0.543 3.14 -0.335 -- 0.854 -- -- -0.0246 -- 31.49 1318 -- --
137.54 0.546 3.13 -- 0.143 0.817 -- -- 0.00172 8.47 31.58 1296 -- --
172.36 0.613 3.17 -0.112 -- -- -- -- -0.186 -- -- -- -- --
171.25 0.612 3.17 -- 0.167 -- -- -- -0.177 5.53 -- -- -- --
138.66 0.548 3.13 -- -- 0.808 -- -- 0.00082 -- 31.6 1317 -- --
172.69 0.613 3.17 -- -- -- -- -- -0.173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.97 humidity 50 4320 > th dose independent rect. 16 1
2 130.89 temperature 30 1440 < th dose independent rect. 9 3
3 131.05 humidity 50 1440 < th dose independent rect. 16 1
4 131.06 radiation 10 14400 > th dose independent rect. 5 1
16 131.10 humidity 50 1440 < th dose dependent rect. 16 1
17 131.13 temperature 30 1440 > th dose independent rect. 9 3
18 131.40 temperature 30 1440 > th dose dependent rect. 15 21
19 131.54 temperature 30 1440 < th dose independent rect. 18 18
28 131.95 temperature 30 1440 > th dose dependent sin 11 NA
32 132.04 temperature 30 1440 < th dose independent rect. 22 14
34 132.04 temperature 30 1440 > th dose dependent sin 14 NA
35 132.05 temperature 30 1440 < th dose independent rect. 6 6
44 132.08 temperature 30 1440 < th dose independent rect. 2 10
45 132.08 temperature 30 1440 < th dose independent rect. 24 12
46 132.08 temperature 30 1440 > th dose independent rect. 18 18
54 132.11 temperature 30 1440 > th dose dependent rect. 10 9
85 132.15 temperature 30 1440 > th dose dependent no NA NA
86 132.15 temperature 30 1440 > th dose dependent rect. 15 4
244 132.32 temperature 30 1440 > th dose dependent rect. 13 6
329 132.77 radiation 30 4320 > th dose independent rect. 7 1
383 132.92 radiation 30 14400 > th dose independent rect. 16 1
404 132.93 temperature 30 1440 > th dose dependent rect. 11 1
433 133.04 temperature 30 1440 < th dose independent sin 9 NA
472 133.12 humidity 50 1440 > th dose independent rect. 16 8
474 133.12 humidity 50 1440 > th dose independent rect. 16 11
495 133.14 humidity 50 1440 > th dose independent rect. 16 4
532 133.19 humidity 50 1440 > th dose independent rect. 16 16
566 133.50 temperature 30 1440 > th dose independent sin 8 NA
623 134.07 radiation 30 4320 < th dose independent rect. 7 1
671 134.24 humidity 50 4320 > th dose independent rect. 16 20
776 134.90 radiation 30 4320 < th dose independent rect. 19 13
801 135.02 radiation 30 4320 < th dose independent rect. 22 10
807 135.06 radiation 30 14400 > th dose dependent rect. 16 1
855 135.31 radiation 30 4320 < th dose independent rect. 17 15
860 135.34 radiation 30 4320 < th dose independent rect. 2 6
861 135.34 humidity 50 4320 > th dose independent rect. 16 22
933 135.46 humidity 50 4320 > th dose independent rect. 13 4
936 135.49 temperature 25 1440 > th dose dependent rect. 7 1
965 135.57 temperature 30 1440 > th dose independent rect. 9 10