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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0617200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.69 (0.0301) R2 : 0.596
β1 : 1.34 (0.11) R2dD : 0.137 R2D : 0.0756
β2 : 1.73 (0.0786) R2dC : 0.433 R2C : 0.39
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.619 (0.0643) R2dN8 : 0.11 R2N8 : 0.033
σ : 0.566
deviance : 146.02
__
_____
C
peak time of C : 18.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
131.69 0.539 4.67 1.28 1.73 0.66 0.0129 1.23 0.713 18.3 39.3 1356 -- --
132.99 0.537 4.67 1.39 1.76 0.708 0.00789 -- 0.736 18.4 38.71 1234 -- --
131.69 0.534 4.67 1.28 1.73 0.66 -- 1.23 0.713 18.3 39.31 1356 -- --
132.34 0.536 4.67 1.45 1.73 0.532 -- -- 0.755 18.4 41.54 1284 -- --
285.54 0.787 4.63 1.22 -- 0.649 -- 1.49 0.717 -- 38.09 1408 -- --
146.02 0.567 4.69 1.34 1.73 -- 0.00634 -- 0.619 18.1 -- -- -- --
146.02 0.566 4.69 1.34 1.73 -- -- -- 0.619 18.1 -- -- -- --
287.73 0.79 4.63 1.41 -- 0.575 -- -- 0.729 -- 43.16 1390 -- --
183.47 0.631 4.7 -- 1.7 0.66 -- -- 0.544 18.1 49.83 1285 -- --
301.83 0.812 4.66 1.3 -- -- -- -- 0.58 -- -- -- -- --
193.7 0.651 4.72 -- 1.71 -- -- -- 0.469 18.2 -- -- -- --
333.68 0.851 4.66 -- -- 0.791 -- -- 0.536 -- 49.83 1401 -- --
346.14 0.868 4.69 -- -- -- -- -- 0.436 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 125.84 temperature 15.0 10 > th dose independent rect. 8 20
2 125.86 wind 5.0 270 < th dose independent rect. 3 2
4 125.91 atmosphere 995.0 30 > th dose dependent rect. 8 20
5 126.08 wind 9.0 10 < th dose independent rect. 8 20
7 126.21 wind 5.0 30 < th dose independent rect. 4 4
10 126.40 precipitation 0.1 270 < th dose independent rect. 3 2
11 126.40 precipitation 0.1 270 < th dose dependent rect. 3 2
12 126.41 atmosphere 995.0 10 > th dose independent rect. 8 20
15 126.47 precipitation 0.1 10 < th dose independent rect. 4 4
16 126.47 precipitation 0.1 10 < th dose dependent rect. 4 4
23 126.55 temperature 10.0 10 > th dose independent rect. 4 4
25 126.55 temperature 30.0 10 < th dose independent rect. 4 4
26 126.55 humidity 50.0 10 > th dose independent rect. 4 4
28 126.55 atmosphere 995.0 10 > th dose independent rect. 4 4
29 126.55 atmosphere 1015.0 10 < th dose independent rect. 4 4
40 126.58 radiation 40.0 30 < th dose independent rect. 4 4
41 126.58 wind 9.0 270 < th dose independent rect. 5 22
44 126.59 precipitation 0.1 270 < th dose independent rect. 2 15
45 126.59 precipitation 0.1 270 < th dose dependent rect. 2 15
47 126.63 wind 9.0 10 < th dose dependent rect. 4 4
53 126.76 atmosphere 1000.0 30 > th dose independent rect. 20 8
60 126.96 radiation 1.0 270 < th dose dependent rect. 3 2
62 127.00 radiation 1.0 270 < th dose independent rect. 3 2
66 127.01 temperature 10.0 270 > th dose independent rect. 3 2
68 127.01 temperature 30.0 270 < th dose independent rect. 3 2
69 127.01 humidity 50.0 270 > th dose independent rect. 3 2
72 127.01 atmosphere 995.0 270 > th dose independent rect. 3 2
73 127.01 atmosphere 1010.0 270 < th dose independent rect. 3 2
78 127.01 temperature 10.0 270 > th dose independent rect. 5 22
81 127.06 radiation 10.0 270 < th dose independent rect. 17 9
82 127.07 humidity 50.0 30 > th dose independent rect. 8 20
84 127.15 radiation 30.0 270 < th dose dependent rect. 17 9
89 127.22 precipitation 0.1 10 < th dose independent rect. 8 20
90 127.22 precipitation 0.1 10 < th dose dependent rect. 8 20
91 127.28 temperature 10.0 270 > th dose independent rect. 17 9
95 127.28 temperature 10.0 270 > th dose independent rect. 2 15
96 127.28 atmosphere 1015.0 270 < th dose independent rect. 2 15
102 127.32 wind 9.0 270 < th dose independent rect. 17 9
103 127.33 atmosphere 995.0 270 > th dose independent rect. 17 9
104 127.34 humidity 50.0 270 > th dose independent rect. 17 9
109 127.49 temperature 15.0 270 > th dose independent rect. 6 20
111 127.50 radiation 40.0 10 < th dose dependent rect. 4 4
112 127.51 temperature 15.0 30 > th dose independent rect. 20 8
119 127.61 temperature 30.0 30 < th dose independent rect. 8 20
121 127.69 wind 9.0 270 < th dose dependent rect. 3 2
125 127.77 atmosphere 1010.0 270 < th dose independent rect. 2 4
154 127.84 precipitation 0.1 30 < th dose independent rect. 4 16
156 127.84 precipitation 0.1 30 < th dose dependent rect. 4 16
157 127.86 temperature 10.0 10 > th dose dependent rect. 4 4
176 127.90 atmosphere 995.0 10 > th dose dependent rect. 4 4
185 128.06 temperature 30.0 30 < th dose independent rect. 20 8
186 128.06 humidity 50.0 30 > th dose independent rect. 20 8
190 128.06 radiation 1.0 30 < th dose independent rect. 20 8
195 128.06 temperature 10.0 30 > th dose independent rect. 4 16
197 128.06 atmosphere 1015.0 30 < th dose independent rect. 4 16
198 128.06 radiation 1.0 30 < th dose dependent rect. 20 8
203 128.07 temperature 10.0 270 > th dose dependent rect. 3 2
205 128.09 precipitation 0.1 270 < th dose independent rect. 14 16
206 128.09 precipitation 0.1 270 < th dose dependent rect. 14 16
214 128.11 humidity 50.0 270 > th dose independent rect. 6 20
216 128.12 wind 7.0 270 < th dose independent rect. 6 8
221 128.14 wind 9.0 30 < th dose independent rect. 20 8
226 128.18 wind 9.0 270 < th dose independent rect. 2 15
238 128.21 atmosphere 995.0 10 > th dose dependent rect. 8 8
270 128.27 precipitation 0.1 30 < th dose independent rect. 20 8
281 128.27 precipitation 0.1 30 < th dose dependent rect. 20 8
291 128.39 atmosphere 1000.0 270 > th dose dependent rect. 2 3
292 128.43 humidity 50.0 30 > th dose dependent rect. 4 4
294 128.44 humidity 50.0 270 > th dose dependent rect. 3 2
305 128.54 wind 9.0 30 < th dose independent rect. 4 16
311 128.61 atmosphere 995.0 270 > th dose independent rect. 6 20
338 128.78 radiation 1.0 270 < th dose dependent rect. 2 7
342 128.82 atmosphere 1015.0 30 < th dose dependent rect. 4 16
343 128.84 radiation 1.0 270 < th dose independent rect. 2 7
344 128.84 precipitation 0.1 270 < th dose independent rect. 17 9
346 128.84 precipitation 0.1 270 < th dose dependent rect. 17 9
358 128.91 wind 1.0 270 > th dose independent rect. 3 2
374 128.97 humidity 50.0 30 > th dose dependent rect. 20 8
375 128.97 wind 9.0 10 < th dose dependent rect. 16 16
376 128.98 atmosphere 995.0 90 > th dose independent rect. 7 8
378 128.98 atmosphere 1015.0 10 < th dose independent rect. 8 20
385 129.01 radiation 1.0 270 < th dose independent rect. 12 14
406 129.10 radiation 40.0 90 < th dose independent rect. 15 16
421 129.14 humidity 50.0 30 > th dose dependent rect. 8 20
423 129.15 precipitation 0.1 90 < th dose independent rect. 7 8
427 129.15 precipitation 0.1 90 < th dose dependent rect. 7 8
431 129.18 temperature 10.0 90 > th dose independent rect. 7 8
432 129.18 atmosphere 1015.0 90 < th dose independent rect. 7 8
433 129.18 temperature 10.0 90 > th dose independent rect. 15 16
443 129.22 atmosphere 1000.0 30 > th dose dependent rect. 2 6
448 129.23 radiation 1.0 270 < th dose dependent rect. 12 14
458 129.25 temperature 30.0 270 < th dose independent rect. 18 8
466 129.27 temperature 10.0 30 > th dose dependent rect. 4 16
508 129.40 radiation 1.0 270 < th dose independent rect. 7 19
511 129.41 humidity 50.0 270 > th dose independent rect. 6 8
529 129.46 radiation 1.0 270 < th dose dependent rect. 5 21
535 129.48 atmosphere 995.0 270 > th dose independent rect. 2 15
541 129.51 temperature 30.0 270 < th dose independent rect. 6 9
542 129.51 wind 9.0 270 < th dose independent rect. 14 16
549 129.53 atmosphere 995.0 10 > th dose independent rect. 8 8
563 129.57 radiation 1.0 270 < th dose dependent rect. 7 19
586 129.60 humidity 50.0 270 > th dose dependent rect. 18 8
589 129.61 precipitation 0.1 270 < th dose independent rect. 6 20
593 129.61 temperature 10.0 10 > th dose dependent rect. 2 6
595 129.61 precipitation 0.1 270 < th dose dependent rect. 6 20
659 129.73 wind 1.0 270 > th dose independent rect. 13 17
713 129.82 wind 9.0 1440 < th dose independent rect. 3 6
714 129.82 temperature 10.0 1440 > th dose independent rect. 3 6
717 129.82 humidity 50.0 1440 > th dose independent rect. 3 6
719 129.82 atmosphere 995.0 1440 > th dose independent rect. 3 6
723 129.82 temperature 10.0 1440 > th dose independent rect. 9 18
789 129.90 temperature 10.0 90 > th dose dependent rect. 15 16
825 129.98 radiation 1.0 270 > th dose independent rect. 6 7
828 129.99 wind 9.0 30 < th dose dependent rect. 8 20
829 130.00 wind 9.0 1440 < th dose independent rect. 5 4
830 130.00 temperature 10.0 1440 > th dose independent rect. 5 4
833 130.00 humidity 50.0 1440 > th dose independent rect. 5 4
835 130.00 atmosphere 995.0 1440 > th dose independent rect. 5 4
836 130.00 atmosphere 1015.0 1440 < th dose independent rect. 5 4
840 130.00 temperature 10.0 1440 > th dose independent rect. 9 20
856 130.01 wind 9.0 10 < th dose independent rect. 8 8
898 130.11 temperature 30.0 30 < th dose dependent rect. 4 4
902 130.11 temperature 10.0 10 > th dose dependent rect. 15 17
911 130.14 wind 9.0 270 < th dose dependent rect. 6 7
912 130.14 temperature 10.0 270 > th dose dependent rect. 13 17
982 130.25 temperature 10.0 270 > th dose dependent rect. 2 16
987 130.27 temperature 10.0 10 > th dose independent rect. 8 8
989 130.27 atmosphere 1015.0 10 < th dose independent rect. 8 8
990 130.27 precipitation 0.1 10 < th dose independent rect. 8 8
992 130.27 temperature 10.0 10 > th dose independent rect. 16 16
993 130.27 precipitation 0.1 10 < th dose independent rect. 16 16
995 130.27 precipitation 0.1 10 < th dose dependent rect. 8 8
997 130.27 precipitation 0.1 10 < th dose dependent rect. 16 16
1000 130.28 wind 1.0 90 > th dose independent rect. 7 8