FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0616400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Stem cell self-renewal protein Piwi domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.015) R2 : 0.0133
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0783 (0.0316) R2dN8 : 0.0172 R2N8 : 0.0133
σ : 0.283
deviance : 36.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.08 0.278 2.92 0.308 0.119 -0.317 -0.149 2.16 0.129 19.4 26.89 250 -- --
35.87 0.279 2.95 0.1 0.102 -0.0993 -0.0744 -- 0.0972 19.3 26.7 302 -- --
35.12 0.276 2.92 0.306 0.119 -0.337 -- 2.25 0.125 19.4 27.24 250 -- --
35.82 0.279 2.95 0.107 0.113 -0.116 -- -- 0.0902 19.8 26.62 249 -- --
35.75 0.278 2.92 0.302 -- -0.288 -- 2.45 0.12 -- 27.6 248 -- --
35.94 0.281 2.95 0.0863 0.0847 -- -0.148 -- 0.0884 21.8 -- -- -- --
36.02 0.281 2.95 0.0923 0.0865 -- -- -- 0.0889 21.5 -- -- -- --
36.26 0.28 2.94 0.0939 -- 0.248 -- -- 0.0866 -- 34.01 88 -- --
36.12 0.28 2.95 -- 0.105 -0.0964 -- -- 0.0781 20 26.8 283 -- --
36.46 0.282 2.94 0.0928 -- -- -- -- 0.0886 -- -- -- -- --
36.25 0.282 2.95 -- 0.0866 -- -- -- 0.0786 21.5 -- -- -- --
36.39 0.281 2.94 -- -- 0.385 -- -- 0.0863 -- 34.6 157 -- --
36.69 0.283 2.95 -- -- -- -- -- 0.0783 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.25 wind 9.0 1440 < th dose independent rect. 23 1
2 30.25 temperature 10.0 1440 > th dose independent rect. 23 1
5 30.25 temperature 30.0 1440 < th dose independent rect. 23 1
9 30.25 humidity 50.0 1440 > th dose independent rect. 23 1
19 30.25 atmosphere 995.0 1440 > th dose independent rect. 23 1
20 30.25 radiation 1.0 1440 < th dose independent rect. 23 1
40 30.25 temperature 10.0 1440 > th dose independent rect. 24 23
43 30.25 radiation 1.0 1440 < th dose dependent rect. 23 1
48 30.28 humidity 90.0 30 < th dose independent rect. 22 1
49 30.31 atmosphere 1005.0 30 > th dose dependent rect. 22 1
50 30.34 atmosphere 1005.0 30 > th dose independent rect. 22 1
52 30.35 temperature 25.0 30 > th dose independent rect. 22 1
53 30.36 temperature 20.0 30 > th dose dependent rect. 22 1
58 30.39 precipitation 0.1 30 < th dose independent rect. 22 1
59 30.39 precipitation 0.1 30 < th dose dependent rect. 22 1
60 30.40 wind 1.0 30 > th dose independent rect. 22 1
62 30.40 humidity 90.0 30 < th dose dependent rect. 22 1
65 30.43 wind 5.0 30 < th dose independent rect. 22 1
68 30.43 temperature 10.0 30 > th dose independent rect. 22 1
70 30.43 temperature 30.0 30 < th dose independent rect. 22 1
71 30.43 humidity 50.0 30 > th dose independent rect. 22 1
75 30.43 atmosphere 1010.0 30 < th dose independent rect. 22 1
77 30.43 radiation 1.0 30 < th dose independent rect. 22 1
82 30.43 temperature 10.0 30 > th dose independent rect. 23 23
83 30.43 radiation 1.0 30 < th dose dependent rect. 22 1
89 30.45 wind 9.0 30 < th dose dependent rect. 22 1
92 30.49 humidity 50.0 30 > th dose dependent rect. 22 1
94 30.50 wind 1.0 30 > th dose dependent rect. 22 1
99 30.69 atmosphere 1015.0 30 < th dose dependent rect. 22 1
103 30.82 temperature 30.0 30 < th dose dependent rect. 22 1
104 30.90 temperature 15.0 1440 > th dose independent rect. 21 1
108 30.91 temperature 30.0 1440 < th dose independent rect. 21 1
112 30.91 humidity 50.0 1440 > th dose independent rect. 21 1
118 30.91 atmosphere 995.0 1440 > th dose independent rect. 21 1
119 30.91 radiation 1.0 1440 < th dose independent rect. 21 1
139 30.91 temperature 10.0 1440 > th dose independent rect. 22 23
143 30.92 radiation 20.0 1440 < th dose dependent rect. 21 1
157 30.95 atmosphere 1005.0 30 > th dose dependent rect. 20 1
158 30.96 temperature 25.0 30 > th dose independent rect. 20 1
159 30.97 wind 3.0 30 > th dose independent rect. 20 1
160 30.97 atmosphere 1005.0 30 > th dose independent rect. 20 1
162 30.98 humidity 80.0 30 > th dose independent rect. 20 1
163 30.98 humidity 90.0 30 < th dose independent rect. 20 1
164 30.99 temperature 20.0 30 > th dose dependent rect. 20 1
168 31.00 wind 1.0 30 > th dose dependent rect. 20 1
169 31.00 temperature 10.0 30 > th dose dependent rect. 20 1
174 31.01 wind 5.0 30 < th dose independent rect. 20 1
177 31.01 temperature 15.0 30 > th dose independent rect. 21 23
181 31.02 temperature 10.0 30 > th dose independent rect. 20 1
183 31.02 temperature 30.0 30 < th dose independent rect. 20 1
184 31.02 humidity 50.0 30 > th dose independent rect. 20 1
188 31.02 atmosphere 1010.0 30 < th dose independent rect. 20 1
190 31.02 radiation 1.0 30 < th dose independent rect. 20 1
195 31.02 precipitation 0.1 30 < th dose independent rect. 20 1
197 31.02 humidity 50.0 30 > th dose dependent rect. 20 1
199 31.02 radiation 1.0 30 < th dose dependent rect. 20 1
204 31.02 precipitation 0.1 30 < th dose dependent rect. 20 1
205 31.03 wind 9.0 30 < th dose dependent rect. 20 1
213 31.07 humidity 90.0 30 < th dose dependent rect. 20 1
214 31.10 wind 9.0 30 < th dose independent rect. 21 23
218 31.11 temperature 30.0 30 < th dose dependent rect. 20 1
219 31.11 atmosphere 1015.0 30 < th dose dependent rect. 20 1
232 31.24 temperature 25.0 30 > th dose independent rect. 20 3
235 31.27 wind 9.0 30 < th dose independent rect. 23 23
274 31.36 atmosphere 1005.0 10 > th dose dependent rect. 20 3
280 31.42 temperature 25.0 30 > th dose dependent rect. 20 3
283 31.44 temperature 25.0 30 > th dose dependent rect. 20 7
319 31.53 atmosphere 995.0 30 > th dose independent rect. 21 23
327 31.60 wind 9.0 1440 < th dose independent rect. 21 1
336 31.69 precipitation 0.1 30 < th dose independent rect. 21 23
337 31.69 precipitation 0.1 30 < th dose dependent rect. 21 23
353 31.98 humidity 50.0 30 > th dose independent rect. 21 23
358 32.18 humidity 90.0 30 < th dose independent rect. 20 3
386 32.50 atmosphere 1005.0 30 > th dose independent rect. 20 3
415 32.83 precipitation 0.1 1440 < th dose independent rect. 21 1
416 32.83 precipitation 0.1 1440 < th dose dependent rect. 21 1
438 33.02 humidity 80.0 30 > th dose independent rect. 20 3
465 33.28 wind 5.0 30 < th dose independent rect. 20 3
476 33.36 atmosphere 1015.0 30 < th dose independent rect. 21 23
482 33.39 wind 3.0 10 > th dose independent rect. 20 3
562 33.67 atmosphere 995.0 30 > th dose independent rect. 23 21
567 33.70 precipitation 0.1 30 < th dose independent rect. 20 3
569 33.70 precipitation 0.1 30 < th dose dependent rect. 20 3
570 33.71 temperature 10.0 1440 > th dose independent rect. 21 3
573 33.71 temperature 30.0 1440 < th dose independent rect. 21 3
577 33.71 humidity 50.0 1440 > th dose independent rect. 21 3
583 33.71 atmosphere 995.0 1440 > th dose independent rect. 21 3
584 33.71 radiation 1.0 1440 < th dose independent rect. 21 3
605 33.71 temperature 10.0 1440 > th dose independent rect. 24 21
608 33.71 radiation 10.0 1440 < th dose dependent rect. 21 3
626 33.74 wind 9.0 30 < th dose independent rect. 23 21
630 33.75 temperature 10.0 30 > th dose independent rect. 20 3
632 33.75 temperature 30.0 30 < th dose independent rect. 20 3
633 33.75 humidity 50.0 30 > th dose independent rect. 20 3
637 33.75 atmosphere 1010.0 30 < th dose independent rect. 20 3
639 33.75 radiation 1.0 30 < th dose independent rect. 20 3
644 33.75 temperature 10.0 30 > th dose independent rect. 23 21
648 33.75 radiation 1.0 30 < th dose dependent rect. 20 3
688 33.83 temperature 10.0 30 > th dose dependent rect. 23 21
713 33.85 humidity 50.0 30 > th dose independent rect. 23 21
715 33.86 temperature 10.0 30 > th dose dependent rect. 21 23
718 33.87 wind 9.0 30 < th dose dependent rect. 20 3
720 33.88 precipitation 0.1 30 < th dose independent rect. 23 21
721 33.88 precipitation 0.1 30 < th dose dependent rect. 23 21
730 33.91 radiation 10.0 10 < th dose independent rect. 21 23
732 33.92 atmosphere 995.0 30 > th dose independent rect. 23 23
747 33.96 radiation 20.0 10 < th dose dependent rect. 21 23
753 33.98 temperature 30.0 30 < th dose independent rect. 21 23
756 33.98 humidity 90.0 30 < th dose dependent rect. 20 3
780 34.04 humidity 50.0 30 > th dose dependent rect. 20 3
831 34.17 atmosphere 1015.0 30 < th dose independent rect. 23 21
845 34.19 temperature 25.0 720 > th dose dependent rect. 23 10
855 34.21 wind 1.0 10 > th dose dependent rect. 20 3
869 34.23 radiation 10.0 10 < th dose independent rect. 23 21
891 34.26 temperature 10.0 10 > th dose dependent rect. 4 16
900 34.28 temperature 25.0 720 > th dose independent rect. 1 8
938 34.34 humidity 50.0 30 > th dose independent rect. 12 8
946 34.34 radiation 20.0 10 < th dose dependent rect. 23 21
955 34.36 atmosphere 995.0 10 > th dose independent rect. 12 8
969 34.38 precipitation 0.1 1440 < th dose independent rect. 21 3
973 34.38 precipitation 0.1 1440 < th dose dependent rect. 21 3
976 34.38 atmosphere 995.0 10 > th dose dependent rect. 12 8
984 34.39 atmosphere 1015.0 10 < th dose independent rect. 20 16