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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0615500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.48 (0.0542) R2 : 0.883
β1 : 4.81 (0.246) R2dD : 0.18 R2D : 0.0493
β2 : 1.4 (0.153) R2dC : 0.031 R2C : -0.0657
β3 : 0.744 (0.159) R2dE : 0.00916 R2E : -0.0649
β4 : 7.04 (0.927) R2dD*C : 0.0431 R2D*C : -0.173
β5 : -7.24 (0.753) R2dD*E : 0.0902 R2D*E : -0.186
γ1 : -4.64 (0.125) R2dN8 : 0.635 R2N8 : 0.702
σ : 0.952
deviance : 410.61
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_____
C
peak time of C : 15.6
E
wheather : temperature
threshold : 24.82
memory length : 735
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.13
open length of G : 4.67

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
410.61 0.952 8.48 4.81 1.4 0.744 7.04 -7.24 -4.64 15.6 24.82 735 6.13 4.67
502.09 1.05 8.67 3.19 1.95 0.421 -0.605 -- -5.21 15.3 24.2 523 7.8 2.45
479.81 1.02 8.41 4.86 1.5 0.736 -- -5.53 -4.57 15.8 24.54 2039 5.4 4.61
482.91 1.02 8.66 3.35 1.73 0.83 -- -- -5.1 15.7 23.7 518 8.6 0.946
624.37 1.16 8.45 4.69 -- 1.49 -- -5.53 -4.54 -- 24.53 2262 4.03 5.88
504.83 1.05 8.68 3.15 1.94 -- -0.682 -- -5.23 15.2 -- -- -- --
506.22 1.05 8.68 3.14 1.94 -- -- -- -5.24 15.3 -- -- -- --
513.08 1.05 8.78 3.52 -- 1.57 -- -- -5.14 -- 36.36 2146 6.5 5.08
765.29 1.29 8.75 -- 1.72 0.325 -- -- -5.42 15.5 27 518 8.8 1.57
719.32 1.25 8.68 3.06 -- -- -- -- -5.29 -- -- -- -- --
765.91 1.29 8.76 -- 1.88 -- -- -- -5.59 15.3 -- -- -- --
757.44 1.28 8.74 -- -- 1.6 -- -- -5.55 -- 104.6 2142 6.38 5.93
965.77 1.45 8.76 -- -- -- -- -- -5.63 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 412.37 temperature 25 720 < th dose independent rect. 6 5
8 422.26 temperature 25 720 > th dose independent rect. 6 5
9 422.26 temperature 25 720 > th dose dependent rect. 6 5
29 427.78 temperature 25 270 < th dose independent rect. 19 11
52 430.26 humidity 60 270 > th dose independent sin 21 NA
53 430.28 humidity 60 90 > th dose independent sin 19 NA
67 431.73 humidity 60 30 > th dose independent rect. 3 23
72 432.26 wind 1 43200 < th dose dependent rect. 6 1
77 433.08 temperature 25 270 > th dose dependent rect. 6 13
79 433.11 temperature 25 270 > th dose independent rect. 22 7
85 433.38 humidity 60 270 > th dose independent rect. 10 23
96 433.80 humidity 60 270 > th dose independent rect. 10 12
111 434.32 wind 1 43200 < th dose dependent rect. 5 3
117 434.48 humidity 60 270 > th dose independent rect. 8 23
124 434.83 temperature 25 270 > th dose dependent sin 0 NA
125 434.92 wind 1 43200 > th dose independent rect. 5 2
141 435.50 radiation 20 720 < th dose independent sin 11 NA
145 435.70 humidity 60 270 > th dose independent rect. 1 23
164 436.08 radiation 20 720 < th dose independent rect. 18 15
167 436.17 temperature 25 270 < th dose independent sin 12 NA
168 436.17 wind 1 43200 > th dose independent rect. 5 4
184 436.67 wind 1 43200 < th dose independent rect. 5 4
210 437.18 humidity 60 270 > th dose independent rect. 23 23
235 438.00 wind 1 43200 < th dose independent rect. 6 1
237 438.13 temperature 25 270 > th dose dependent rect. 16 23
243 438.19 humidity 60 270 < th dose independent rect. 17 23
250 438.37 temperature 25 270 > th dose dependent rect. 14 23
270 438.98 humidity 60 270 > th dose independent no NA NA
292 439.39 temperature 25 270 > th dose dependent no NA NA
304 439.86 humidity 60 270 < th dose independent sin 1 NA
332 440.43 humidity 70 30 < th dose dependent rect. 15 23
340 440.62 radiation 30 720 < th dose independent rect. 18 17
343 440.70 temperature 25 720 > th dose dependent sin 6 NA
373 441.50 humidity 60 270 < th dose independent no NA NA
374 441.50 humidity 60 270 < th dose independent rect. 8 12
452 441.52 humidity 60 270 < th dose independent rect. 8 10
482 441.61 humidity 60 270 > th dose independent rect. 12 23
486 441.69 humidity 60 90 < th dose independent rect. 11 23
493 441.91 humidity 90 43200 < th dose independent rect. 5 1
546 442.42 humidity 60 270 < th dose independent rect. 13 23
572 442.83 humidity 70 90 < th dose dependent rect. 11 23
575 442.94 humidity 60 30 > th dose independent rect. 23 23
587 443.30 humidity 90 43200 > th dose independent rect. 5 1
699 443.77 radiation 20 720 < th dose independent rect. 16 17
707 443.88 humidity 70 90 < th dose dependent rect. 17 23
717 444.15 humidity 60 270 > th dose independent rect. 3 14
718 444.15 humidity 70 90 < th dose dependent rect. 6 13
743 444.17 humidity 70 90 < th dose dependent no NA NA
799 444.19 temperature 20 720 < th dose independent rect. 4 3
815 444.44 humidity 60 90 < th dose independent sin 20 NA
835 444.57 temperature 25 270 > th dose dependent rect. 24 6
838 444.65 humidity 70 90 < th dose dependent rect. 9 23
846 444.80 humidity 60 270 > th dose independent sin 10 NA
870 445.26 humidity 70 90 < th dose dependent rect. 13 23
888 445.33 temperature 20 720 < th dose independent rect. 5 1
897 445.45 humidity 60 30 > th dose independent rect. 5 23
936 446.04 temperature 25 270 > th dose independent rect. 24 2
940 446.06 radiation 10 14400 < th dose dependent rect. 10 1
941 446.07 radiation 30 720 < th dose independent rect. 3 8
965 446.32 humidity 70 10 < th dose dependent rect. 13 23
972 446.45 humidity 60 90 > th dose independent rect. 16 23
983 446.55 radiation 30 720 < th dose independent rect. 1 8
988 446.57 radiation 20 720 > th dose dependent rect. 15 18