Os02g0612000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GrpE protein family protein.
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Os02g0612000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GrpE protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.36 | 0.346 | 12.5 | -0.0149 | 0.694 | 0.93 | 0.409 | 1.39 | -0.515 | 19.4 | 1.623 | 71 | -- | -- |
| 57.95 | 0.355 | 12.5 | 0.0131 | 0.7 | 0.857 | 0.0322 | -- | -0.508 | 19.3 | -0.5498 | 64 | -- | -- |
| 54.76 | 0.345 | 12.5 | -0.02 | 0.692 | 0.909 | -- | 1.23 | -0.513 | 19.3 | 1.69 | 70 | -- | -- |
| 57.9 | 0.354 | 12.5 | 0.00735 | 0.707 | 0.852 | -- | -- | -0.502 | 19.2 | 0.9596 | 59 | -- | -- |
| 72.64 | 0.397 | 12.5 | -0.0363 | -- | 0.788 | -- | 1.11 | -0.531 | -- | -0.074 | 278 | -- | -- |
| 65.76 | 0.38 | 12.5 | 0.00756 | 0.766 | -- | 0.558 | -- | -0.478 | 16.7 | -- | -- | -- | -- |
| 66.57 | 0.382 | 12.5 | 0.0104 | 0.771 | -- | -- | -- | -0.476 | 16.7 | -- | -- | -- | -- |
| 72.08 | 0.395 | 12.5 | -0.0549 | -- | 0.859 | -- | -- | -0.57 | -- | -3.9 | 625 | -- | -- |
| 57.9 | 0.354 | 12.5 | -- | 0.702 | 0.855 | -- | -- | -0.504 | 19.2 | 1.02 | 59 | -- | -- |
| 98.03 | 0.463 | 12.5 | -0.0187 | -- | -- | -- | -- | -0.496 | -- | -- | -- | -- | -- |
| 66.57 | 0.382 | 12.5 | -- | 0.77 | -- | -- | -- | -0.477 | 16.7 | -- | -- | -- | -- |
| 72.16 | 0.396 | 12.5 | -- | -- | 0.857 | -- | -- | -0.563 | -- | -35.39 | 625 | -- | -- |
| 98.04 | 0.462 | 12.5 | -- | -- | -- | -- | -- | -0.494 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.37 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 24 | 14 |
| 3 | 51.43 | radiation | 40.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 5 | 51.57 | radiation | 1.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 22 | 52.10 | radiation | 1.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 26 | 52.26 | radiation | 40.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 29 | 52.31 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 20 |
| 70 | 52.98 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 11 | 21 |
| 77 | 53.06 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 81 | 53.12 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 14 |
| 84 | 53.14 | radiation | 40.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 88 | 53.15 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 89 | 53.17 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 5 | 5 |
| 117 | 53.28 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 120 | 53.31 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 127 | 53.37 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 133 | 53.43 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 199 | 53.82 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 200 | 53.83 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 7 | 7 |
| 208 | 53.87 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 212 | 53.89 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 248 | 54.03 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 2 | 13 |
| 253 | 54.05 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 7 |
| 255 | 54.05 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 273 | 54.13 | radiation | 1.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 281 | 54.16 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 283 | 54.17 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 297 | 54.23 | radiation | 1.0 | 270 | > th | dose independent | sin | 5 | NA |
| 298 | 54.23 | radiation | 1.0 | 270 | < th | dose independent | sin | 5 | NA |
| 303 | 54.25 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 342 | 54.32 | radiation | 20.0 | 90 | < th | dose independent | sin | 6 | NA |
| 343 | 54.32 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 9 |
| 376 | 54.42 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 381 | 54.43 | radiation | 10.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 387 | 54.44 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 388 | 54.45 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 412 | 54.50 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 433 | 54.56 | radiation | 20.0 | 90 | < th | dose independent | rect. | 2 | 17 |
| 453 | 54.58 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 470 | 54.61 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 494 | 54.63 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 500 | 54.65 | radiation | 40.0 | 10 | < th | dose independent | rect. | 2 | 18 |
| 577 | 54.73 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 579 | 54.74 | radiation | 1.0 | 90 | > th | dose dependent | no | NA | NA |
| 641 | 54.75 | radiation | 20.0 | 90 | > th | dose independent | sin | 6 | NA |
| 658 | 54.78 | temperature | 25.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 662 | 54.80 | radiation | 20.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 675 | 54.82 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 7 |
| 683 | 54.83 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 7 |
| 702 | 54.87 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 15 |
| 726 | 54.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 730 | 54.92 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 740 | 54.95 | radiation | 40.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 741 | 54.95 | radiation | 20.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 811 | 55.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 820 | 55.03 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 20 |
| 823 | 55.03 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 825 | 55.04 | radiation | 20.0 | 90 | < th | dose independent | rect. | 1 | 7 |
| 832 | 55.05 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 841 | 55.06 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 857 | 55.07 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 15 |
| 864 | 55.07 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 15 |
| 868 | 55.09 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 878 | 55.09 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 893 | 55.12 | radiation | 40.0 | 90 | < th | dose dependent | no | NA | NA |
| 951 | 55.18 | radiation | 40.0 | 10 | < th | dose dependent | no | NA | NA |
| 972 | 55.18 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 974 | 55.19 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 977 | 55.20 | humidity | 80.0 | 90 | > th | dose independent | rect. | 1 | 8 |
| 987 | 55.21 | radiation | 20.0 | 90 | < th | dose independent | rect. | 1 | 20 |