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Os02g0611400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.49 (0.0266) R2 : 0.651
β1 : 1.63 (0.0976) R2dD : 0.222 R2D : 0.189
β2 : 1.67 (0.0688) R2dC : 0.455 R2C : 0.434
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.212 (0.0569) R2dN8 : 0.0142 R2N8 : -0.0125
σ : 0.501
deviance : 114.41
__
_____
C
peak time of C : 16.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.64 0.467 9.51 1.6 1.5 1.01 0.834 0.99 0.171 17.8 10.23 73 -- --
100.31 0.466 9.51 1.63 1.51 0.914 0.887 -- 0.177 17.7 7.67 72 -- --
100.32 0.466 9.51 1.61 1.51 0.999 -- 1.02 0.176 17.8 8.967 72 -- --
102.22 0.471 9.5 1.63 1.51 0.938 -- -- 0.179 17.8 7.12 69 -- --
159.91 0.589 9.5 1.52 -- 1.72 -- 0.492 0.0428 -- -2.15 502 -- --
112.37 0.497 9.49 1.62 1.67 -- 0.883 -- 0.207 16.7 -- -- -- --
114.41 0.501 9.49 1.63 1.67 -- -- -- 0.212 16.8 -- -- -- --
160.26 0.59 9.51 1.5 -- 1.73 -- -- 0.033 -- -3.358 503 -- --
171.53 0.613 9.54 -- 1.53 0.883 -- -- 0.0391 17.7 7.12 69 -- --
263.01 0.758 9.48 1.57 -- -- -- -- 0.168 -- -- -- -- --
184.32 0.635 9.53 -- 1.65 -- -- -- 0.0304 16.8 -- -- -- --
219.95 0.691 9.54 -- -- 1.77 -- -- -0.137 -- -37.09 503 -- --
327.66 0.845 9.51 -- -- -- -- -- -0.00551 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.27 wind 5.0 90 < th dose independent rect. 3 5
2 86.34 wind 5.0 270 < th dose independent rect. 3 3
6 87.09 radiation 30.0 90 < th dose independent rect. 3 6
8 87.49 precipitation 0.1 90 < th dose independent rect. 3 5
9 87.49 precipitation 0.1 90 < th dose dependent rect. 3 5
10 87.78 wind 9.0 90 < th dose independent rect. 8 19
12 87.91 precipitation 0.1 270 < th dose independent rect. 3 3
13 87.91 precipitation 0.1 270 < th dose dependent rect. 3 3
15 87.95 precipitation 0.1 90 < th dose independent rect. 8 19
16 87.95 precipitation 0.1 90 < th dose dependent rect. 8 19
19 88.00 atmosphere 1000.0 90 > th dose dependent rect. 3 5
20 88.00 temperature 10.0 90 > th dose dependent rect. 8 7
22 88.14 temperature 30.0 90 < th dose independent rect. 3 6
25 88.19 wind 9.0 90 < th dose dependent rect. 3 5
27 88.22 temperature 10.0 90 > th dose independent rect. 3 5
30 88.22 humidity 50.0 90 > th dose independent rect. 3 5
32 88.22 atmosphere 995.0 90 > th dose independent rect. 3 5
33 88.22 atmosphere 1015.0 90 < th dose independent rect. 3 5
34 88.22 temperature 10.0 90 > th dose independent rect. 8 19
41 88.43 radiation 30.0 90 < th dose independent rect. 3 8
42 88.44 wind 9.0 270 < th dose independent rect. 6 21
46 88.63 radiation 20.0 270 < th dose dependent rect. 2 6
53 88.72 wind 5.0 10 < th dose independent rect. 4 5
58 88.77 radiation 20.0 270 < th dose independent rect. 1 7
63 88.85 wind 9.0 10 < th dose dependent rect. 4 5
65 88.89 temperature 10.0 270 > th dose independent rect. 3 3
67 88.89 temperature 30.0 270 < th dose independent rect. 3 3
68 88.89 humidity 50.0 270 > th dose independent rect. 3 3
71 88.89 atmosphere 995.0 270 > th dose independent rect. 3 3
72 88.89 atmosphere 1015.0 270 < th dose independent rect. 3 3
73 88.89 radiation 20.0 270 < th dose independent rect. 3 3
83 88.89 temperature 10.0 270 > th dose independent rect. 6 21
88 88.95 wind 9.0 270 < th dose dependent rect. 3 3
89 88.98 radiation 40.0 270 < th dose dependent rect. 3 3
90 88.99 wind 9.0 10 < th dose independent rect. 9 19
96 89.08 radiation 10.0 270 < th dose dependent rect. 3 4
99 89.09 temperature 10.0 90 > th dose dependent rect. 3 5
115 89.13 radiation 1.0 270 < th dose dependent rect. 3 2
117 89.14 precipitation 0.1 10 < th dose independent rect. 4 5
119 89.14 precipitation 0.1 10 < th dose dependent rect. 4 5
123 89.21 radiation 1.0 270 < th dose independent rect. 3 2
135 89.36 radiation 40.0 90 < th dose independent rect. 3 16
137 89.37 temperature 10.0 10 > th dose independent rect. 4 5
139 89.37 temperature 30.0 10 < th dose independent rect. 4 5
140 89.37 humidity 50.0 10 > th dose independent rect. 4 5
142 89.37 atmosphere 995.0 10 > th dose independent rect. 4 5
143 89.37 atmosphere 1015.0 10 < th dose independent rect. 4 5
144 89.37 temperature 10.0 10 > th dose independent rect. 9 19
170 89.58 precipitation 0.1 270 < th dose independent rect. 6 21
172 89.58 precipitation 0.1 270 < th dose dependent rect. 6 21
173 89.59 atmosphere 1005.0 90 > th dose independent rect. 3 5
177 89.65 atmosphere 1005.0 270 > th dose independent rect. 3 3
203 89.81 wind 1.0 270 > th dose independent rect. 2 5
211 89.89 temperature 10.0 270 > th dose dependent rect. 3 3
212 89.89 atmosphere 1000.0 270 > th dose dependent rect. 3 3
216 89.95 radiation 40.0 10 < th dose independent rect. 4 5
218 89.96 humidity 70.0 90 > th dose independent rect. 3 8
228 90.08 atmosphere 995.0 90 > th dose independent rect. 8 19
231 90.10 atmosphere 1000.0 10 > th dose dependent rect. 4 5
232 90.11 temperature 15.0 90 > th dose independent rect. 8 7
288 90.37 temperature 15.0 90 > th dose independent rect. 15 17
316 90.49 humidity 90.0 90 < th dose independent rect. 8 7
324 90.52 humidity 50.0 270 > th dose dependent rect. 3 2
331 90.56 temperature 10.0 10 > th dose dependent rect. 9 6
337 90.60 precipitation 0.1 90 < th dose independent rect. 8 7
339 90.60 precipitation 0.1 90 < th dose dependent rect. 8 7
377 90.71 wind 9.0 90 < th dose independent rect. 8 7
400 90.80 atmosphere 995.0 10 > th dose independent rect. 9 19
402 90.81 wind 1.0 270 > th dose independent rect. 3 2
403 90.82 temperature 10.0 10 > th dose dependent rect. 4 5
410 90.84 atmosphere 1015.0 90 < th dose independent rect. 8 7
414 90.86 humidity 50.0 90 > th dose independent rect. 8 19
431 90.92 temperature 10.0 270 > th dose dependent rect. 8 3
432 90.93 wind 1.0 90 > th dose independent rect. 8 7
433 90.93 wind 7.0 90 < th dose independent rect. 15 17
459 90.98 temperature 10.0 270 > th dose dependent rect. 9 1
462 90.98 humidity 50.0 270 > th dose dependent rect. 19 7
474 91.03 radiation 40.0 90 < th dose independent rect. 15 17
499 91.12 atmosphere 995.0 90 > th dose independent rect. 8 7
544 91.23 radiation 40.0 90 < th dose dependent rect. 4 15
553 91.26 atmosphere 1005.0 10 > th dose independent rect. 4 5
568 91.32 radiation 1.0 270 < th dose dependent rect. 18 9
578 91.37 precipitation 0.1 270 < th dose independent rect. 3 15
579 91.37 precipitation 0.1 270 < th dose dependent rect. 3 15
588 91.42 atmosphere 995.0 90 > th dose independent rect. 15 17
608 91.47 atmosphere 1015.0 90 < th dose independent rect. 15 17
616 91.50 humidity 50.0 90 > th dose dependent rect. 3 6
618 91.51 radiation 10.0 270 < th dose independent rect. 18 9
639 91.55 precipitation 0.1 270 < th dose independent rect. 14 17
641 91.55 precipitation 0.1 270 < th dose dependent rect. 14 17
642 91.56 radiation 1.0 90 > th dose independent rect. 8 7
644 91.56 temperature 10.0 270 > th dose independent rect. 18 9
645 91.56 humidity 50.0 270 > th dose independent rect. 18 9
649 91.56 temperature 10.0 270 > th dose independent rect. 3 15
650 91.56 atmosphere 1015.0 270 < th dose independent rect. 3 15
654 91.57 atmosphere 995.0 270 > th dose independent rect. 18 9
658 91.58 wind 9.0 270 < th dose independent rect. 18 9
724 91.80 temperature 30.0 270 < th dose independent rect. 19 8
750 91.83 radiation 40.0 270 < th dose independent rect. 11 20
806 91.99 radiation 40.0 270 < th dose independent rect. 13 18
827 92.05 radiation 40.0 10 < th dose dependent rect. 4 16
887 92.21 atmosphere 995.0 270 > th dose independent rect. 6 21
900 92.28 humidity 50.0 270 > th dose independent rect. 7 6
908 92.31 precipitation 0.1 270 < th dose independent rect. 19 7
910 92.31 precipitation 0.1 270 < th dose dependent rect. 19 7
931 92.38 precipitation 0.1 270 < th dose independent rect. 18 9
932 92.38 precipitation 0.1 270 < th dose dependent rect. 18 9
940 92.41 humidity 50.0 270 > th dose independent rect. 6 21
943 92.42 wind 9.0 270 < th dose dependent rect. 7 6
981 92.55 wind 9.0 270 < th dose independent rect. 3 15
998 92.61 wind 9.0 270 < th dose independent rect. 2 17