Os02g0610700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0610700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.62 | 0.317 | 11.6 | -1.2 | 2.1 | -1.51 | 0.864 | 1.84 | -0.319 | 6.28 | 19.52 | 409 | -- | -- |
| 47.11 | 0.32 | 11.6 | -1.49 | 2.15 | -1.71 | 0.551 | -- | -0.385 | 6.24 | 15.6 | 413 | -- | -- |
| 46.99 | 0.319 | 11.6 | -1.34 | 2.11 | -1.5 | -- | 1.11 | -0.374 | 6.26 | 18.76 | 410 | -- | -- |
| 47.41 | 0.321 | 11.6 | -1.51 | 2.13 | -1.69 | -- | -- | -0.412 | 6.26 | 15.81 | 413 | -- | -- |
| 174.79 | 0.616 | 11.5 | -0.25 | -- | -3.48 | -- | 6.87 | -0.0919 | -- | 24.4 | 414 | -- | -- |
| 81.57 | 0.423 | 11.6 | -1.91 | 2.63 | -- | 0.79 | -- | -0.673 | 6.19 | -- | -- | -- | -- |
| 83.1 | 0.427 | 11.6 | -1.9 | 2.63 | -- | -- | -- | -0.675 | 6.19 | -- | -- | -- | -- |
| 187.54 | 0.638 | 11.6 | -1.32 | -- | -2.96 | -- | -- | -0.33 | -- | 24.3 | 402 | -- | -- |
| 69.13 | 0.387 | 11.5 | -- | 2.67 | -1.76 | -- | -- | -0.109 | 5.93 | 12.29 | 24077 | -- | -- |
| 442.26 | 0.983 | 11.7 | -1.83 | -- | -- | -- | -- | -0.617 | -- | -- | -- | -- | -- |
| 178.12 | 0.624 | 11.6 | -- | 2.6 | -- | -- | -- | -0.464 | 6.23 | -- | -- | -- | -- |
| 231.82 | 0.709 | 11.6 | -- | -- | -3.16 | -- | -- | -0.149 | -- | 24.1 | 414 | -- | -- |
| 530.21 | 1.07 | 11.6 | -- | -- | -- | -- | -- | -0.415 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 16 | 44.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 14 |
| 17 | 44.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 21 | 45.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 46 | 46.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 50 | 46.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 66 | 46.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 68 | 46.99 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 73 | 47.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 82 | 47.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 98 | 47.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 104 | 47.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 121 | 47.76 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |
| 182 | 48.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 209 | 48.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 224 | 48.64 | temperature | 15 | 270 | > th | dose dependent | sin | 21 | NA |
| 238 | 48.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 269 | 48.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 280 | 48.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 6 |
| 284 | 48.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 419 | 49.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 509 | 49.44 | temperature | 15 | 1440 | > th | dose dependent | sin | 7 | NA |
| 595 | 49.58 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 697 | 49.76 | temperature | 30 | 1440 | < th | dose dependent | sin | 8 | NA |
| 744 | 49.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 820 | 50.00 | temperature | 15 | 720 | > th | dose dependent | sin | 2 | NA |
| 879 | 50.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 13 |
| 921 | 50.20 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 942 | 50.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 990 | 50.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |