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Os02g0609900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.2 (0.0503) R2 : 0.651
β1 : 6.33 (0.281) R2dD : 0.945 R2D : 0.114
β2 : 1.23 (0.119) R2dC : 0.0801 R2C : 0.0586
β3 : -1.61 (0.186) R2dE : 0.071 R2E : 0.00505
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.41 (0.812) R2dD*E : 0.208 R2D*E : -0.546
γ1 : 1.56 (0.111) R2dN8 : 0.215 R2N8 : 0.044
σ : 0.933
deviance : 401.05
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C
peak time of C : 23.1
E
wheather : radiation
threshold : 0.1699
memory length : 4313
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.8
open length of G : 12.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
400.25 0.94 7.2 6.25 1.32 -1.58 0.717 -8.16 1.54 23.3 0.17 4336 17.9 12
501.65 1.04 7.13 5.15 1.51 -1.21 0.638 -- 1.66 23 12.98 13010 17.7 12.8
401.05 0.933 7.2 6.33 1.23 -1.61 -- -8.41 1.56 23.1 0.1699 4313 17.8 12.1
493.48 1.03 7.14 5.35 1.17 -1.56 -- -- 1.59 23.3 56.27 17274 17.5 12.6
474.36 1.01 7.18 6.22 -- -1.58 -- -8.38 1.56 -- 0.17 5661 17.8 12.1
509.61 1.06 7.2 4.12 1.33 -- 0.589 -- 1.43 23.5 -- -- -- --
511.07 1.06 7.2 4.1 1.32 -- -- -- 1.43 23.4 -- -- -- --
509.98 1.06 7.15 4.06 -- 1 -- -- 1.53 -- 56.27 17274 17.5 12.6
514.91 1.06 7.4 -- 1.21 3.91 -- -- 0.444 23 120.5 47520 21.6 7.95
621.03 1.16 7.17 4.13 -- -- -- -- 1.44 -- -- -- -- --
953.81 1.44 7.3 -- 1.37 -- -- -- 0.973 23.6 -- -- -- --
547.88 1.09 7.44 -- -- 4.35 -- -- 0.305 -- 300.1 47520 19.2 10.1
1071.7 1.53 7.27 -- -- -- -- -- 0.985 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 392.14 precipitation 0.1 43200 < th dose independent rect. 4 1
2 392.14 precipitation 0.1 43200 < th dose dependent rect. 4 1
3 392.25 precipitation 0.1 43200 > th dose dependent rect. 4 1
4 392.57 precipitation 0.1 43200 > th dose independent rect. 4 1
9 393.23 precipitation 0.1 43200 < th dose independent rect. 1 5
10 393.23 precipitation 0.1 43200 < th dose dependent rect. 1 5
11 393.24 precipitation 0.1 43200 > th dose independent rect. 1 5
12 393.39 humidity 70.0 43200 > th dose dependent rect. 14 1
13 393.47 precipitation 0.1 43200 > th dose dependent rect. 24 6
19 393.83 humidity 70.0 43200 > th dose independent rect. 14 2
24 394.37 humidity 90.0 14400 < th dose independent rect. 23 5
25 394.38 humidity 90.0 14400 < th dose independent rect. 24 2
75 395.92 precipitation 0.1 43200 > th dose dependent rect. 1 9
83 396.12 precipitation 0.1 43200 < th dose independent rect. 1 9
84 396.12 precipitation 0.1 43200 < th dose dependent rect. 1 9
99 396.29 precipitation 0.1 43200 > th dose independent rect. 1 9
177 397.60 wind 3.0 14400 > th dose dependent rect. 17 2
207 398.82 wind 7.0 43200 > th dose independent rect. 18 1
209 398.88 wind 7.0 43200 < th dose independent rect. 18 1
210 398.88 radiation 1.0 43200 < th dose dependent rect. 19 13
213 398.92 radiation 1.0 43200 < th dose dependent rect. 22 10
227 399.25 radiation 1.0 43200 < th dose dependent rect. 4 4
233 399.35 humidity 90.0 43200 > th dose dependent rect. 7 1
263 399.68 radiation 1.0 43200 < th dose dependent sin 8 NA
278 399.85 humidity 90.0 14400 > th dose independent rect. 23 5
281 399.86 humidity 90.0 14400 > th dose independent rect. 24 1
307 400.05 humidity 80.0 43200 < th dose independent rect. 7 10
311 400.09 wind 7.0 43200 > th dose dependent rect. 18 1
312 400.09 radiation 1.0 43200 < th dose dependent rect. 5 1
349 400.38 humidity 90.0 14400 > th dose independent rect. 23 3
368 400.66 humidity 80.0 43200 < th dose independent rect. 15 2
394 400.92 humidity 90.0 14400 > th dose independent rect. 23 7
411 401.05 precipitation 0.1 43200 > th dose dependent rect. 23 15
419 401.15 radiation 1.0 43200 > th dose independent rect. 7 1
421 401.17 radiation 1.0 43200 < th dose independent rect. 18 20
425 401.23 radiation 1.0 43200 > th dose independent rect. 18 20
429 401.28 radiation 1.0 43200 < th dose independent rect. 7 1
441 401.42 radiation 1.0 43200 > th dose independent rect. 18 18
444 401.44 humidity 80.0 43200 > th dose independent rect. 6 12
447 401.45 temperature 15.0 43200 > th dose dependent rect. 6 1
477 401.68 radiation 1.0 43200 > th dose independent rect. 5 9
489 401.76 radiation 1.0 43200 < th dose independent rect. 5 9
497 401.84 radiation 1.0 43200 > th dose independent rect. 5 7
509 401.92 wind 1.0 43200 < th dose dependent rect. 20 12
510 401.93 radiation 1.0 43200 < th dose independent rect. 5 7
536 402.02 radiation 1.0 43200 < th dose independent rect. 22 16
579 402.17 radiation 1.0 43200 < th dose dependent rect. 7 23
583 402.19 temperature 20.0 43200 > th dose dependent rect. 12 1
601 402.22 radiation 1.0 43200 < th dose dependent rect. 13 20
664 402.32 temperature 20.0 43200 > th dose dependent rect. 12 3
689 402.38 temperature 20.0 43200 > th dose dependent rect. 14 1
691 402.39 humidity 80.0 43200 < th dose independent sin 0 NA
692 402.39 radiation 1.0 43200 < th dose dependent no NA NA
693 402.39 radiation 1.0 43200 < th dose dependent rect. 4 22
696 402.39 radiation 1.0 43200 < th dose dependent rect. 22 23
706 402.40 radiation 1.0 43200 < th dose dependent rect. 20 23
744 402.50 radiation 1.0 43200 > th dose independent sin 6 NA
757 402.54 radiation 1.0 43200 < th dose dependent rect. 4 17
769 402.56 radiation 1.0 43200 < th dose dependent rect. 4 15
784 402.59 radiation 1.0 43200 < th dose independent sin 6 NA
830 402.71 humidity 80.0 43200 > th dose independent sin 0 NA
832 402.71 wind 1.0 43200 < th dose independent rect. 13 1
859 402.82 temperature 15.0 43200 > th dose dependent rect. 5 8
880 402.91 temperature 15.0 43200 > th dose dependent rect. 2 13
900 402.96 temperature 20.0 43200 > th dose dependent rect. 7 8
932 403.01 temperature 30.0 43200 < th dose dependent rect. 6 1
975 403.12 temperature 15.0 43200 > th dose dependent sin 5 NA