Os02g0609700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0609700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 287.17 | 0.796 | 5.81 | 1.33 | 0.512 | -1.01 | 0.173 | -6.32 | -0.231 | 9.44 | 24.7 | 3144 | -- | -- |
| 325.8 | 0.841 | 5.92 | -0.274 | 0.551 | -0.902 | 0.617 | -- | -0.334 | 8.98 | 31.5 | 4029 | -- | -- |
| 287.26 | 0.789 | 5.81 | 1.33 | 0.513 | -1.01 | -- | -6.31 | -0.232 | 9.34 | 24.75 | 3143 | -- | -- |
| 323.79 | 0.838 | 5.9 | -0.237 | 0.619 | -0.967 | -- | -- | -0.254 | 9.17 | 31.3 | 4015 | -- | -- |
| 302.09 | 0.81 | 5.81 | 1.38 | -- | -0.972 | -- | -6.38 | -0.21 | -- | 24.77 | 3061 | -- | -- |
| 363.88 | 0.894 | 5.95 | 0.0469 | 0.514 | -- | 0.0662 | -- | -0.4 | 9.06 | -- | -- | -- | -- |
| 363.89 | 0.893 | 5.95 | 0.0489 | 0.514 | -- | -- | -- | -0.4 | 9.02 | -- | -- | -- | -- |
| 340.59 | 0.86 | 5.92 | -0.208 | -- | -1.06 | -- | -- | -0.212 | -- | 31.4 | 4129 | -- | -- |
| 323.47 | 0.838 | 5.9 | -- | 0.559 | -1.09 | -- | -- | -0.188 | 9.61 | 31.5 | 4016 | -- | -- |
| 379.11 | 0.91 | 5.96 | 0.0482 | -- | -- | -- | -- | -0.397 | -- | -- | -- | -- | -- |
| 363.96 | 0.892 | 5.95 | -- | 0.515 | -- | -- | -- | -0.405 | 9.02 | -- | -- | -- | -- |
| 341.73 | 0.861 | 5.92 | -- | -- | -1.04 | -- | -- | -0.211 | -- | 31.5 | 4125 | -- | -- |
| 379.17 | 0.909 | 5.97 | -- | -- | -- | -- | -- | -0.402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 279.87 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 87 | 286.43 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 99 | 287.07 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 137 | 289.37 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 148 | 289.66 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 159 | 289.93 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 160 | 289.94 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 172 | 290.15 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 185 | 290.26 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 206 | 290.52 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 223 | 290.69 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 234 | 290.84 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 302 | 291.35 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 312 | 291.41 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 322 | 291.44 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 325 | 291.46 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 336 | 291.53 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 342 | 291.55 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 411 | 291.94 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 441 | 292.09 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 473 | 292.25 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 475 | 292.26 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 594 | 292.81 | temperature | 25.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 601 | 292.84 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 14 |
| 609 | 292.88 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 682 | 293.21 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 17 |
| 712 | 293.34 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 743 | 293.46 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 757 | 293.50 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 758 | 293.50 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 769 | 293.54 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 828 | 293.76 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 829 | 293.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 830 | 293.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 834 | 293.80 | temperature | 25.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 886 | 294.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 931 | 294.11 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 984 | 294.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 2 |