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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0609000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.31 (0.11) R2 : 0.751
β1 : -1.62 (0.464) R2dD : 0.0255 R2D : 0.152
β2 : 2.1 (0.161) R2dC : 0.0953 R2C : 0.0495
β3 : 4.02 (0.282) R2dE : 0.263 R2E : 0.505
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.47 (1.26) R2dD*E : 0.0821 R2D*E : 0.299
γ1 : -0.164 (0.226) R2dN8 : 0.000869 R2N8 : 0.00469
σ : 1.26
deviance : 736.33
__
_____
C
peak time of C : 0.164
E
wheather : temperature
threshold : 25.9
memory length : 20561
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.43
open length of G : 3.55

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
728.85 1.27 5.3 -1.7 2.07 3.92 1.99 -7.4 -0.138 0.0552 25.3 20363 8.08 3.52
760.54 1.28 5.67 -1.95 2.16 4.43 2.02 -- -0.356 0.0685 23.69 29989 8.2 3.65
736.33 1.26 5.31 -1.62 2.1 4.02 -- -7.47 -0.164 0.164 25.9 20561 8.43 3.55
776.11 1.3 5.71 -2.12 2.03 4.61 -- -- -0.536 0.167 23.56 29270 8.05 4.13
977.98 1.46 5.28 -1.68 -- 3.93 -- -6.58 -0.0977 -- 26.4 21307 8.89 3.49
1129.62 1.58 6.18 -7.01 1.86 -- 2.16 -- -2.68 0.000853 -- -- -- --
1149.78 1.59 6.18 -7.1 1.85 -- -- -- -2.69 0.0861 -- -- -- --
1017.92 1.49 5.7 -2.05 -- 4.49 -- -- -0.589 -- 23.4 28558 8.04 4.31
823.22 1.34 5.7 -- 1.84 5.86 -- -- -0.182 0.127 23.5 31929 8.31 4.53
1366.22 1.73 6.14 -7.04 -- -- -- -- -2.66 -- -- -- -- --
2476.87 2.33 6.01 -- 1.76 -- -- -- -1.9 23.9 -- -- -- --
1068.64 1.52 5.57 -- -- 6.08 -- -- -0.0848 -- 22.6 47250 8.42 4.86
2672.53 2.41 5.97 -- -- -- -- -- -1.88 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 687.78 radiation 20.0 43200 > th dose dependent rect. 16 15
2 691.52 radiation 1.0 43200 < th dose dependent rect. 7 1
3 696.91 radiation 30.0 43200 > th dose dependent rect. 15 17
4 697.31 radiation 1.0 43200 < th dose independent rect. 7 2
5 697.35 radiation 1.0 43200 > th dose independent rect. 7 2
6 697.38 radiation 1.0 43200 > th dose independent rect. 7 4
7 697.41 radiation 1.0 43200 < th dose independent rect. 7 4
13 700.75 radiation 10.0 43200 > th dose dependent rect. 17 1
25 702.49 radiation 1.0 43200 < th dose dependent rect. 7 5
42 706.38 radiation 30.0 43200 < th dose independent rect. 16 9
44 706.47 radiation 30.0 43200 < th dose independent rect. 16 7
45 706.62 radiation 30.0 43200 < th dose independent rect. 16 5
46 706.67 radiation 30.0 43200 < th dose independent rect. 16 12
50 706.90 radiation 30.0 43200 < th dose independent rect. 16 1
56 707.32 radiation 30.0 43200 < th dose independent rect. 16 14
84 714.68 radiation 30.0 43200 > th dose independent rect. 16 16
99 716.08 radiation 10.0 43200 < th dose dependent rect. 18 12
124 718.30 radiation 10.0 43200 < th dose independent rect. 5 1
127 718.64 humidity 80.0 43200 > th dose dependent rect. 14 1
128 719.18 radiation 10.0 43200 < th dose independent rect. 19 11
129 719.19 radiation 10.0 43200 < th dose independent rect. 24 6
130 719.23 radiation 10.0 43200 < th dose independent rect. 2 4
150 721.71 humidity 70.0 43200 < th dose independent rect. 7 1
152 721.81 radiation 1.0 43200 < th dose dependent rect. 9 3
153 722.28 precipitation 0.1 43200 > th dose dependent rect. 4 1
157 722.78 humidity 90.0 43200 > th dose dependent rect. 1 2
162 723.94 radiation 1.0 43200 < th dose independent rect. 9 2
163 724.07 radiation 1.0 43200 > th dose independent rect. 9 2
165 724.12 radiation 1.0 43200 < th dose dependent rect. 10 1
181 724.54 humidity 70.0 43200 > th dose independent rect. 7 1
208 727.56 precipitation 0.1 43200 > th dose independent rect. 4 1
238 728.51 precipitation 0.1 43200 < th dose independent rect. 4 1
239 728.51 precipitation 0.1 43200 < th dose dependent rect. 4 1
266 730.35 temperature 20.0 43200 > th dose independent rect. 14 1
269 730.69 radiation 40.0 43200 < th dose independent rect. 6 2
272 730.90 radiation 40.0 43200 < th dose independent rect. 19 13
276 731.12 radiation 40.0 43200 < th dose independent rect. 24 8
286 731.54 radiation 40.0 43200 < th dose independent rect. 2 6
298 732.23 temperature 20.0 43200 < th dose independent rect. 14 1
300 732.53 radiation 40.0 43200 > th dose dependent rect. 14 19
322 733.31 radiation 1.0 43200 < th dose dependent rect. 21 14
329 733.60 radiation 1.0 43200 < th dose dependent rect. 21 17
335 733.78 radiation 1.0 43200 < th dose dependent rect. 4 7
340 733.93 radiation 30.0 43200 > th dose independent rect. 7 1
357 734.06 radiation 1.0 43200 < th dose dependent rect. 4 10
387 734.88 wind 1.0 43200 < th dose dependent rect. 20 1
389 734.92 humidity 90.0 43200 > th dose dependent rect. 24 8
392 735.30 radiation 40.0 43200 < th dose dependent rect. 16 7
393 735.31 radiation 40.0 43200 < th dose dependent rect. 16 5
395 735.37 radiation 40.0 43200 < th dose dependent rect. 16 9
404 735.47 radiation 30.0 43200 > th dose dependent rect. 7 1
449 736.44 wind 1.0 43200 < th dose dependent rect. 20 9
473 736.78 radiation 1.0 43200 < th dose dependent sin 6 NA
475 736.84 humidity 80.0 43200 > th dose independent rect. 13 1
489 737.52 humidity 80.0 43200 < th dose independent rect. 15 1
514 738.39 radiation 10.0 43200 < th dose dependent rect. 19 10
536 739.72 radiation 10.0 43200 < th dose dependent rect. 3 2
539 739.76 radiation 10.0 43200 < th dose dependent rect. 22 7
548 740.00 radiation 10.0 43200 < th dose dependent rect. 24 5
586 740.92 wind 1.0 43200 < th dose dependent rect. 18 11
608 741.96 wind 1.0 43200 < th dose dependent rect. 22 7
637 742.47 humidity 90.0 43200 > th dose independent rect. 23 3
693 743.04 humidity 90.0 43200 > th dose dependent rect. 14 14
725 743.75 humidity 80.0 43200 > th dose dependent rect. 10 19
737 744.01 temperature 20.0 43200 < th dose independent rect. 7 1
762 744.22 humidity 90.0 43200 > th dose dependent sin 10 NA
764 744.23 humidity 90.0 43200 < th dose independent rect. 23 2
825 745.40 temperature 20.0 43200 < th dose independent rect. 5 1
835 745.73 humidity 80.0 43200 > th dose dependent rect. 22 20
840 745.84 humidity 90.0 43200 > th dose dependent rect. 23 16
849 746.06 temperature 20.0 43200 < th dose dependent rect. 24 1
899 747.39 temperature 20.0 43200 > th dose independent rect. 5 1
933 748.19 temperature 20.0 43200 < th dose dependent rect. 22 5
957 748.54 temperature 20.0 43200 > th dose independent rect. 7 1
991 749.14 temperature 20.0 43200 < th dose dependent rect. 2 1