Os02g0608900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Epstein-Barr virus (B95-8 isolate) U2-IR2 domain encoding nuclear protein EBNA2, complete cds.
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Os02g0608900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Epstein-Barr virus (B95-8 isolate) U2-IR2 domain encoding nuclear protein EBNA2, complete cds.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.76 | 0.318 | 13 | 0.198 | 0.751 | -0.153 | -0.689 | 3.16 | -0.322 | 20.7 | 25.45 | 4550 | -- | -- |
| 46.91 | 0.319 | 13.1 | -0.635 | 0.733 | 0.269 | -0.699 | -- | -0.605 | 20.7 | 31.9 | 17031 | -- | -- |
| 47.25 | 0.32 | 13 | 0.273 | 0.754 | -0.209 | -- | 3.59 | -0.326 | 20.7 | 26.4 | 4517 | -- | -- |
| 48.45 | 0.324 | 13.1 | -0.615 | 0.751 | 0.28 | -- | -- | -0.633 | 20.7 | 30.99 | 17307 | -- | -- |
| 79.08 | 0.414 | 12.9 | 0.317 | -- | -0.194 | -- | 3.78 | -0.329 | -- | 26.71 | 4623 | -- | -- |
| 49.51 | 0.33 | 13.1 | -0.506 | 0.75 | -- | -0.68 | -- | -0.476 | 20.7 | -- | -- | -- | -- |
| 51.04 | 0.335 | 13.1 | -0.484 | 0.75 | -- | -- | -- | -0.476 | 20.8 | -- | -- | -- | -- |
| 79.77 | 0.416 | 13.1 | -0.611 | -- | 0.327 | -- | -- | -0.651 | -- | 31.87 | 16758 | -- | -- |
| 56.86 | 0.351 | 13.1 | -- | 0.768 | 0.103 | -- | -- | -0.473 | 20.6 | 30.4 | 18100 | -- | -- |
| 83.07 | 0.426 | 13 | -0.485 | -- | -- | -- | -- | -0.482 | -- | -- | -- | -- | -- |
| 57.21 | 0.354 | 13.1 | -- | 0.752 | -- | -- | -- | -0.423 | 20.8 | -- | -- | -- | -- |
| 85.44 | 0.431 | 13 | -- | -- | -0.234 | -- | -- | -0.487 | -- | 35.48 | 47520 | -- | -- |
| 89.27 | 0.441 | 13 | -- | -- | -- | -- | -- | -0.428 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.49 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 19 |
| 5 | 43.21 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 11 |
| 6 | 43.32 | radiation | 20.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 7 | 43.36 | radiation | 20.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 10 | 43.44 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 9 | 21 |
| 40 | 44.02 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 41 | 44.04 | temperature | 15.0 | 10 | > th | dose independent | rect. | 12 | 19 |
| 44 | 44.05 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 10 |
| 49 | 44.05 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 52 | 44.11 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 14 |
| 53 | 44.12 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 55 | 44.14 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 56 | 44.14 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 58 | 44.15 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 69 | 44.20 | radiation | 1.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 83 | 44.25 | radiation | 1.0 | 10 | > th | dose dependent | sin | 8 | NA |
| 85 | 44.26 | wind | 5.0 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 93 | 44.30 | wind | 5.0 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 95 | 44.30 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 99 | 44.32 | radiation | 10.0 | 90 | < th | dose independent | sin | 7 | NA |
| 101 | 44.32 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 129 | 44.37 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 136 | 44.38 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 18 | 15 |
| 142 | 44.40 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 148 | 44.40 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 155 | 44.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 157 | 44.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 162 | 44.44 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 175 | 44.46 | wind | 5.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 181 | 44.48 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 6 |
| 182 | 44.48 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 13 |
| 187 | 44.49 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 1 | 6 |
| 203 | 44.51 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 1 | 17 |
| 221 | 44.53 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 226 | 44.54 | wind | 9.0 | 10 | < th | dose independent | rect. | 12 | 19 |
| 231 | 44.55 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 232 | 44.55 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 234 | 44.55 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 238 | 44.55 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 240 | 44.56 | wind | 5.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 246 | 44.56 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 253 | 44.57 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 7 |
| 257 | 44.57 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 259 | 44.58 | temperature | 20.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 260 | 44.58 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 262 | 44.58 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 263 | 44.58 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 264 | 44.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 267 | 44.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 269 | 44.58 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 274 | 44.59 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 278 | 44.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 7 |
| 294 | 44.60 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 295 | 44.60 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 297 | 44.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 317 | 44.63 | temperature | 20.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 318 | 44.63 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 319 | 44.63 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 353 | 44.65 | wind | 5.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 361 | 44.65 | wind | 3.0 | 43200 | > th | dose dependent | sin | 10 | NA |
| 368 | 44.65 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 384 | 44.66 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 388 | 44.67 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 390 | 44.67 | radiation | 10.0 | 10 | < th | dose independent | rect. | 1 | 13 |
| 400 | 44.67 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 424 | 44.68 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 442 | 44.70 | wind | 5.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 448 | 44.70 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 473 | 44.71 | humidity | 50.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 483 | 44.71 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 495 | 44.71 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 18 | 18 |
| 499 | 44.72 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 500 | 44.72 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 503 | 44.72 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 508 | 44.72 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 515 | 44.72 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 517 | 44.72 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 524 | 44.72 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 535 | 44.73 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 550 | 44.74 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 552 | 44.74 | wind | 1.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 554 | 44.74 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 575 | 44.75 | wind | 9.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 578 | 44.75 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 608 | 44.76 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 640 | 44.77 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 9 |
| 653 | 44.78 | radiation | 10.0 | 720 | < th | dose independent | rect. | 15 | 16 |
| 654 | 44.78 | wind | 1.0 | 30 | > th | dose independent | rect. | 7 | 18 |
| 668 | 44.79 | radiation | 10.0 | 270 | < th | dose independent | sin | 11 | NA |
| 671 | 44.79 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 689 | 44.79 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 712 | 44.80 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 725 | 44.80 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 745 | 44.81 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 12 | 19 |
| 779 | 44.81 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 782 | 44.82 | wind | 7.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 784 | 44.82 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 837 | 44.83 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 17 | NA |
| 869 | 44.84 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 939 | 44.85 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 987 | 44.86 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 8 |