Os02g0608700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0608700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.4 | 0.222 | 11.9 | -3.27 | 0.126 | -69.7 | 0.66 | -143 | -0.00944 | 12 | 15 | 4425 | -- | -- |
| 25.77 | 0.238 | 12.8 | -0.963 | 0.116 | -1.07 | 0.724 | -- | 0.0486 | 12.1 | 15 | 4425 | -- | -- |
| 23.95 | 0.228 | 11.9 | -3.1 | 0.135 | -69.9 | -- | -143 | -0.00539 | 12.5 | 14.96 | 4164 | -- | -- |
| 23.46 | 0.226 | 12.8 | -1.22 | 0.137 | -0.851 | -- | -- | -0.0451 | 11.2 | 19.23 | 5166 | -- | -- |
| 25.1 | 0.233 | 11.9 | -3.1 | -- | -69.6 | -- | -143 | -0.00687 | -- | 14.96 | 4191 | -- | -- |
| 27.91 | 0.248 | 12.8 | -0.917 | 0.134 | -- | 0.597 | -- | 0.0599 | 12.1 | -- | -- | -- | -- |
| 29.44 | 0.254 | 12.8 | -0.893 | 0.132 | -- | -- | -- | 0.063 | 12.5 | -- | -- | -- | -- |
| 24.62 | 0.231 | 12.9 | -1.23 | -- | -0.858 | -- | -- | -0.0484 | -- | 19 | 4853 | -- | -- |
| 50.05 | 0.331 | 12.8 | -- | 0.0965 | -0.198 | -- | -- | 0.139 | 12 | 63.73 | 22 | -- | -- |
| 30.54 | 0.258 | 12.8 | -0.898 | -- | -- | -- | -- | 0.0607 | -- | -- | -- | -- | -- |
| 50.46 | 0.332 | 12.8 | -- | 0.146 | -- | -- | -- | 0.162 | 12.8 | -- | -- | -- | -- |
| 50.49 | 0.332 | 12.8 | -- | -- | -0.266 | -- | -- | 0.126 | -- | 32.47 | 1042 | -- | -- |
| 51.79 | 0.336 | 12.8 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.51 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 2 | 21.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 3 | 21.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 4 | 21.58 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 7 | 21.63 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 18 | 21.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 19 | 21.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 42 | 21.69 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 46 | 21.71 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 47 | 21.71 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 97 | 21.78 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 103 | 21.79 | humidity | 50.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 104 | 21.79 | humidity | 50.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 109 | 21.80 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 122 | 21.81 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 135 | 21.82 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 148 | 21.84 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 18 | 19 |
| 172 | 21.85 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 173 | 21.86 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 179 | 21.86 | humidity | 50.0 | 43200 | < th | dose dependent | no | NA | NA |
| 240 | 21.87 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 245 | 21.87 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 259 | 21.87 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 284 | 21.88 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 313 | 21.89 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 333 | 21.90 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 345 | 21.90 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 15 | 14 |
| 360 | 21.91 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 372 | 21.91 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 411 | 21.93 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 567 | 22.00 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 571 | 22.00 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 15 | 17 |
| 612 | 22.03 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 650 | 22.05 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 651 | 22.05 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 668 | 22.06 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 670 | 22.06 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 702 | 22.07 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 703 | 22.07 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 713 | 22.07 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 15 | 8 |
| 715 | 22.07 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 724 | 22.07 | humidity | 70.0 | 43200 | < th | dose dependent | sin | 5 | NA |
| 725 | 22.07 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 744 | 22.07 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 15 | 20 |
| 747 | 22.08 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 850 | 22.11 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 901 | 22.12 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 920 | 22.12 | humidity | 70.0 | 43200 | < th | dose dependent | sin | 12 | NA |
| 941 | 22.13 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 18 | NA |