Os02g0608300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAR1 domain containing protein.
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Os02g0608300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAR1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.07 | 0.2 | 11.5 | -0.0038 | 1.07 | 0.251 | 0.115 | -0.653 | -0.258 | 5.93 | 12.37 | 1351 | -- | -- |
| 18.71 | 0.201 | 11.5 | 0.0763 | 1.07 | 0.21 | 0.173 | -- | -0.224 | 5.88 | 11.82 | 1404 | -- | -- |
| 18.06 | 0.198 | 11.5 | 0.00169 | 1.08 | 0.246 | -- | -0.733 | -0.254 | 5.97 | 12.39 | 1274 | -- | -- |
| 18.71 | 0.201 | 11.5 | 0.0741 | 1.07 | 0.221 | -- | -- | -0.218 | 5.88 | 11.19 | 1416 | -- | -- |
| 77.32 | 0.41 | 11.5 | 0.0251 | -- | 0.222 | -- | -0.442 | -0.221 | -- | 22 | 1385 | -- | -- |
| 20.35 | 0.211 | 11.5 | 0.148 | 1.07 | -- | 0.107 | -- | -0.157 | 5.8 | -- | -- | -- | -- |
| 20.38 | 0.211 | 11.5 | 0.148 | 1.07 | -- | -- | -- | -0.157 | 5.79 | -- | -- | -- | -- |
| 77.61 | 0.41 | 11.5 | 0.0836 | -- | 0.257 | -- | -- | -0.221 | -- | 11.68 | 1432 | -- | -- |
| 18.87 | 0.202 | 11.5 | -- | 1.07 | 0.234 | -- | -- | -0.223 | 5.88 | 10.24 | 1423 | -- | -- |
| 79.74 | 0.417 | 11.5 | 0.181 | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
| 20.96 | 0.214 | 11.5 | -- | 1.07 | -- | -- | -- | -0.174 | 5.78 | -- | -- | -- | -- |
| 77.65 | 0.41 | 11.5 | -- | -- | 0.314 | -- | -- | -0.219 | -- | 10.69 | 1427 | -- | -- |
| 80.61 | 0.419 | 11.5 | -- | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.22 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 17.35 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 4 | 17.37 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 5 | 17.37 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 6 | 17.40 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 7 | 17.40 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 9 | 17.41 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 18 | 7 |
| 11 | 17.47 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 12 | 17.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 16 | 17.50 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 18 | 17.50 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 20 | 17.52 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 12 |
| 21 | 17.52 | temperature | 20.0 | 270 | < th | dose independent | rect. | 17 | 13 |
| 36 | 17.55 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 49 | 17.61 | temperature | 20.0 | 270 | < th | dose independent | sin | 12 | NA |
| 72 | 17.65 | temperature | 20.0 | 10 | < th | dose independent | sin | 10 | NA |
| 87 | 17.67 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 9 |
| 90 | 17.68 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 123 | 17.71 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 157 | 17.77 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 176 | 17.79 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 178 | 17.79 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 181 | 17.79 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 238 | 17.79 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 240 | 17.79 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 242 | 17.79 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 343 | 17.83 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 8 |
| 357 | 17.84 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 10 |
| 400 | 17.90 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 412 | 17.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 415 | 17.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 463 | 17.96 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 474 | 17.98 | radiation | 10.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 475 | 17.98 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 536 | 18.03 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 553 | 18.05 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 554 | 18.05 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 561 | 18.05 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 566 | 18.06 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 583 | 18.07 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 585 | 18.07 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 589 | 18.07 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 636 | 18.09 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 645 | 18.09 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 18 | 12 |
| 649 | 18.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 651 | 18.10 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 656 | 18.10 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 8 |
| 663 | 18.11 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 664 | 18.11 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 678 | 18.11 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 696 | 18.13 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 697 | 18.13 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 700 | 18.13 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 715 | 18.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 719 | 18.14 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 721 | 18.14 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 731 | 18.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 738 | 18.15 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 753 | 18.15 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 14 | 4 |
| 756 | 18.15 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 14 | 13 |
| 758 | 18.16 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 771 | 18.16 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 783 | 18.17 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 801 | 18.17 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 813 | 18.18 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 845 | 18.18 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 862 | 18.19 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 13 |
| 863 | 18.19 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 872 | 18.19 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 888 | 18.20 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 905 | 18.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 909 | 18.20 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 918 | 18.20 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 18 | 12 |
| 925 | 18.21 | humidity | 80.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 927 | 18.21 | humidity | 80.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 994 | 18.22 | humidity | 60.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 996 | 18.22 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |