Os02g0608200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0608200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70 | 0.393 | 11.1 | -2.31 | 0.944 | 0.728 | 0.693 | -3.33 | -0.53 | 6.95 | 21.21 | 1545 | -- | -- |
| 76.3 | 0.407 | 11.1 | -1.62 | 0.914 | 0.938 | 0.722 | -- | -0.431 | 7.07 | 13.23 | 8707 | -- | -- |
| 71.03 | 0.393 | 11.1 | -2.29 | 0.965 | 0.739 | -- | -3.4 | -0.528 | 6.82 | 21.12 | 1667 | -- | -- |
| 77.37 | 0.41 | 11 | -1.54 | 0.921 | 0.859 | -- | -- | -0.379 | 6.9 | 11.05 | 8737 | -- | -- |
| 119.51 | 0.509 | 11.1 | -2.13 | -- | 0.646 | -- | -2.76 | -0.461 | -- | 19.9 | 2796 | -- | -- |
| 88.08 | 0.44 | 11 | -1.09 | 0.929 | -- | 0.709 | -- | -0.121 | 6.91 | -- | -- | -- | -- |
| 89.33 | 0.443 | 11 | -1.08 | 0.932 | -- | -- | -- | -0.123 | 6.81 | -- | -- | -- | -- |
| 121.59 | 0.514 | 11.1 | -1.54 | -- | 0.896 | -- | -- | -0.372 | -- | 9.441 | 8587 | -- | -- |
| 85.46 | 0.431 | 11 | -- | 0.91 | -0.77 | -- | -- | -0.0722 | 6.99 | 35.13 | 46664 | -- | -- |
| 134.82 | 0.543 | 11 | -1.06 | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
| 120.1 | 0.513 | 11 | -- | 0.92 | -- | -- | -- | -0.00285 | 6.88 | -- | -- | -- | -- |
| 128.9 | 0.529 | 11 | -- | -- | -0.749 | -- | -- | -0.12 | -- | 35.41 | 47520 | -- | -- |
| 164.45 | 0.599 | 11 | -- | -- | -- | -- | -- | 0.0124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.65 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 69.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 13 | 69.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 38 | 69.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 53 | 69.84 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 61 | 69.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 66 | 69.96 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 91 | 70.11 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 160 | 70.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 21 |
| 190 | 70.47 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 243 | 70.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 322 | 70.82 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 330 | 70.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 335 | 70.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 342 | 70.88 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 349 | 70.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 12 |
| 358 | 70.91 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 413 | 71.08 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 443 | 71.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 464 | 71.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 467 | 71.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 496 | 71.28 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 500 | 71.29 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 626 | 71.52 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 628 | 71.53 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 633 | 71.54 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 651 | 71.57 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 679 | 71.62 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 681 | 71.63 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 720 | 71.69 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 721 | 71.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 725 | 71.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 731 | 71.70 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 732 | 71.70 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 781 | 71.76 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 861 | 71.87 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 874 | 71.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 884 | 71.90 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 935 | 71.95 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 936 | 71.95 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 965 | 71.99 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 990 | 72.01 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 8 | 1 |