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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0608100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAR1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.65 (0.0353) R2 : 0.154
β1 : 0.778 (0.129) R2dD : 0.0701 R2D : 0.0656
β2 : 0.574 (0.0835) R2dC : 0.0879 R2C : 0.0847
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0201 (0.0752) R2dN8 : 0.000178 R2N8 : -0.00132
σ : 0.663
deviance : 200.24
__
_____
C
peak time of C : 12.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.64 0.633 3.59 1.31 0.55 -1.21 0.167 1.48 0.266 14.2 12.06 602 -- --
183.31 0.631 3.62 1.08 0.551 -1.2 0.171 -- 0.212 14.3 14.38 610 -- --
181.73 0.628 3.59 1.32 0.555 -1.22 -- 1.48 0.269 14.3 11.9 597 -- --
183.33 0.631 3.62 1.06 0.561 -1.19 -- -- 0.201 14.3 14.2 596 -- --
192.45 0.646 3.58 1.41 -- -1.3 -- 1.49 0.298 -- 11.62 947 -- --
199.96 0.663 3.65 0.768 0.575 -- 0.26 -- 0.0187 12.2 -- -- -- --
200.24 0.663 3.65 0.778 0.574 -- -- -- 0.0201 12.2 -- -- -- --
194.31 0.649 3.62 1.12 -- -1.29 -- -- 0.22 -- 13.64 926 -- --
209.7 0.674 3.66 -- 0.554 -0.708 -- -- 0.0209 13.4 -2.949 534 -- --
220.98 0.695 3.66 0.76 -- -- -- -- 0.0113 -- -- -- -- --
216.21 0.688 3.67 -- 0.563 -- -- -- -0.0666 12.2 -- -- -- --
223.39 0.696 3.66 -- -- -0.803 -- -- 0.0364 -- 15.8 877 -- --
236.2 0.717 3.68 -- -- -- -- -- -0.0729 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 178.91 temperature 30 270 < th dose dependent rect. 7 18
10 180.20 temperature 10 270 > th dose dependent rect. 1 20
14 180.59 temperature 15 270 > th dose dependent rect. 12 22
28 181.20 temperature 10 720 > th dose dependent rect. 19 22
30 181.27 radiation 1 14400 > th dose independent rect. 17 2
46 181.37 temperature 30 720 < th dose dependent rect. 1 19
49 181.40 radiation 1 14400 < th dose independent rect. 17 12
51 181.42 radiation 1 14400 < th dose independent rect. 17 8
56 181.44 radiation 1 14400 < th dose independent rect. 17 2
74 181.50 temperature 20 4320 > th dose dependent rect. 12 2
75 181.51 temperature 20 4320 > th dose dependent rect. 10 7
80 181.53 temperature 20 4320 > th dose dependent rect. 12 4
108 181.62 temperature 20 4320 > th dose dependent rect. 15 1
132 181.67 radiation 1 14400 < th dose independent sin 14 NA
138 181.68 radiation 1 14400 > th dose independent rect. 7 12
145 181.68 radiation 1 14400 < th dose independent rect. 7 18
156 181.69 radiation 1 14400 < th dose independent rect. 7 12
172 181.70 radiation 1 14400 < th dose independent rect. 17 22
179 181.71 radiation 1 14400 < th dose independent rect. 17 15
188 181.72 radiation 1 14400 < th dose dependent rect. 14 18
204 181.75 radiation 1 14400 < th dose dependent rect. 10 22
205 181.75 temperature 10 720 > th dose dependent rect. 16 23
206 181.75 radiation 1 14400 < th dose dependent rect. 7 23
207 181.76 radiation 1 14400 > th dose independent sin 14 NA
214 181.76 radiation 1 14400 < th dose dependent rect. 18 23
232 181.80 radiation 1 14400 > th dose independent rect. 17 22
234 181.80 humidity 80 43200 > th dose dependent rect. 9 1
237 181.80 radiation 1 14400 < th dose dependent rect. 14 22
247 181.81 radiation 1 14400 < th dose dependent sin 13 NA
253 181.82 radiation 1 14400 < th dose independent rect. 10 22
255 181.82 radiation 1 14400 < th dose dependent no NA NA
257 181.82 radiation 1 14400 < th dose dependent rect. 5 20
259 181.82 radiation 1 14400 < th dose dependent rect. 23 20
284 181.83 radiation 1 14400 < th dose independent rect. 10 20
299 181.83 radiation 1 14400 < th dose dependent rect. 16 23
302 181.84 radiation 1 14400 > th dose independent rect. 17 15
308 181.84 radiation 1 14400 < th dose dependent rect. 5 14
311 181.84 radiation 1 14400 < th dose dependent rect. 3 17
318 181.84 radiation 1 14400 < th dose dependent rect. 7 19
334 181.85 radiation 1 14400 < th dose independent rect. 13 19
362 181.86 radiation 1 14400 < th dose independent rect. 10 16
385 181.87 radiation 1 14400 > th dose independent rect. 10 9
389 181.87 radiation 1 14400 < th dose independent rect. 14 12
395 181.87 radiation 1 14400 < th dose independent rect. 14 14
429 181.88 radiation 1 14400 < th dose independent no NA NA
430 181.88 radiation 1 14400 > th dose independent rect. 14 5
435 181.88 radiation 1 14400 < th dose independent rect. 10 9
443 181.88 radiation 1 14400 < th dose independent rect. 10 13
447 181.88 radiation 1 14400 < th dose independent rect. 14 16
449 181.88 radiation 1 14400 < th dose independent rect. 24 19
467 181.88 radiation 1 14400 < th dose independent rect. 13 23
487 181.89 radiation 1 14400 < th dose independent rect. 14 5
536 181.89 radiation 1 14400 < th dose dependent sin 0 NA
542 181.89 radiation 1 14400 < th dose dependent rect. 7 12
630 181.91 radiation 1 14400 < th dose dependent rect. 14 12
648 181.92 radiation 1 14400 > th dose independent rect. 10 22
695 181.93 wind 9 43200 > th dose dependent rect. 18 2
697 181.93 radiation 1 14400 < th dose dependent rect. 16 10
767 181.95 radiation 1 14400 > th dose independent rect. 13 20
775 181.95 radiation 1 14400 < th dose dependent rect. 22 10
796 181.96 radiation 1 14400 > th dose independent rect. 13 23
798 181.96 radiation 1 14400 < th dose dependent rect. 14 5
801 181.96 radiation 1 14400 < th dose dependent rect. 24 8
822 181.97 radiation 1 14400 > th dose independent no NA NA
884 181.97 radiation 1 14400 < th dose dependent rect. 10 16
898 181.98 temperature 10 4320 > th dose dependent rect. 12 1
900 181.98 radiation 1 14400 < th dose dependent rect. 16 3
933 181.99 temperature 10 720 > th dose dependent no NA NA
980 182.01 radiation 1 14400 < th dose dependent rect. 3 5
981 182.01 radiation 1 14400 < th dose dependent rect. 10 9
988 182.01 radiation 1 14400 < th dose dependent rect. 10 13