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Os02g0606900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein phosphatase 2C gamma isoform (EC 3.1.3.16) (PP2C-gamma) (Protein phosphatase magnesium-dependent 1 gamma) (Protein phosphatase 1C) (Fibroblast growth factor inducible protein 13) (FIN13).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.17 (0.0239) R2 : 0.425
β1 : -1.57 (0.0876) R2dD : 0.419 R2D : 0.331
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.38 (0.0511) R2dN8 : 0.0937 R2N8 : 0.00621
σ : 0.449
deviance : 92.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.49 0.427 8.17 -1.57 0.264 0.707 0.0598 -0.116 -0.378 2.32 9.241 10 -- --
82.51 0.423 8.17 -1.58 0.266 0.714 0.117 -- -0.378 2.24 9.24 10 -- --
82.5 0.423 8.17 -1.57 0.263 0.703 -- -0.16 -0.378 2.39 9.24 10 -- --
82.55 0.423 8.17 -1.58 0.265 0.708 -- -- -0.379 2.37 9.241 10 -- --
84.88 0.429 8.17 -1.56 -- 0.522 -- -0.177 -0.374 -- 15.08 10 -- --
90.55 0.446 8.16 -1.56 0.164 -- -0.245 -- -0.381 8.69 -- -- -- --
90.75 0.446 8.16 -1.57 0.164 -- -- -- -0.381 8.71 -- -- -- --
84.95 0.429 8.17 -1.56 -- 0.526 -- -- -0.375 -- 15.27 10 -- --
144.88 0.561 8.13 -- 0.132 0.935 -- -- -0.209 3.9 35.84 72 -- --
92.28 0.449 8.17 -1.57 -- -- -- -- -0.38 -- -- -- -- --
155.43 0.583 8.13 -- 0.163 -- -- -- -0.207 9.43 -- -- -- --
145.98 0.563 8.13 -- -- 0.901 -- -- -0.213 -- 36.54 70 -- --
156.99 0.585 8.13 -- -- -- -- -- -0.206 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.47 humidity 90.0 270 < th dose independent rect. 9 1
4 77.10 temperature 20.0 90 > th dose dependent rect. 2 11
5 77.15 humidity 70.0 90 > th dose independent rect. 18 11
6 77.36 humidity 90.0 270 < th dose independent rect. 7 5
8 77.52 temperature 15.0 270 > th dose dependent rect. 9 1
10 77.61 radiation 20.0 270 < th dose independent rect. 21 11
11 77.62 temperature 15.0 10 > th dose dependent rect. 9 5
14 77.71 wind 1.0 30 > th dose independent rect. 14 19
17 77.79 radiation 30.0 270 < th dose dependent rect. 16 11
23 77.87 radiation 1.0 270 > th dose dependent rect. 8 3
24 77.88 radiation 40.0 90 < th dose dependent rect. 5 12
29 77.94 humidity 50.0 270 > th dose independent rect. 16 11
33 78.05 wind 1.0 270 > th dose independent rect. 3 14
37 78.13 radiation 10.0 270 < th dose independent rect. 16 11
49 78.23 radiation 1.0 270 > th dose dependent rect. 9 1
54 78.30 wind 1.0 90 > th dose independent rect. 4 4
59 78.31 radiation 1.0 270 > th dose dependent rect. 5 7
71 78.32 temperature 15.0 10 > th dose dependent rect. 2 12
72 78.33 radiation 20.0 90 < th dose independent rect. 5 12
78 78.45 humidity 80.0 10 < th dose independent rect. 9 5
99 78.53 temperature 15.0 270 > th dose dependent rect. 8 3
100 78.54 radiation 10.0 270 > th dose independent rect. 7 5
108 78.61 wind 1.0 270 > th dose independent rect. 4 1
115 78.69 radiation 40.0 90 < th dose independent rect. 5 13
119 78.72 radiation 40.0 10 < th dose independent rect. 12 21
124 78.75 temperature 10.0 1440 > th dose independent rect. 20 10
127 78.75 temperature 30.0 1440 < th dose independent rect. 20 10
131 78.75 humidity 50.0 1440 > th dose independent rect. 20 10
137 78.75 atmosphere 995.0 1440 > th dose independent rect. 20 10
138 78.75 radiation 20.0 1440 < th dose independent rect. 20 10
147 78.75 temperature 10.0 1440 > th dose independent rect. 6 14
151 78.76 humidity 90.0 270 < th dose dependent rect. 9 1
163 78.83 radiation 1.0 90 > th dose independent rect. 14 18
195 78.98 wind 9.0 270 < th dose independent rect. 17 10
198 78.99 radiation 40.0 270 < th dose dependent rect. 21 11
204 79.04 radiation 10.0 270 > th dose independent rect. 8 3
217 79.14 humidity 70.0 90 > th dose independent rect. 23 10
218 79.15 humidity 90.0 90 < th dose dependent rect. 8 5
223 79.16 humidity 90.0 10 < th dose dependent rect. 9 5
225 79.18 precipitation 0.1 270 < th dose independent rect. 3 14
227 79.18 precipitation 0.1 270 < th dose dependent rect. 3 14
228 79.19 temperature 10.0 1440 > th dose independent rect. 6 4
231 79.19 atmosphere 995.0 1440 > th dose independent rect. 6 4
232 79.19 atmosphere 1015.0 1440 < th dose independent rect. 6 4
234 79.19 temperature 15.0 10 > th dose independent rect. 14 19
235 79.19 temperature 10.0 1440 > th dose independent rect. 10 20
238 79.20 temperature 10.0 270 > th dose independent rect. 17 10
242 79.20 temperature 10.0 270 > th dose independent rect. 3 14
243 79.20 atmosphere 1015.0 270 < th dose independent rect. 3 14
245 79.22 temperature 30.0 270 < th dose independent rect. 17 10
252 79.25 radiation 1.0 10 > th dose dependent rect. 9 6
261 79.28 temperature 15.0 270 > th dose independent rect. 21 10
265 79.30 radiation 30.0 90 < th dose independent rect. 23 10
282 79.38 radiation 1.0 270 > th dose dependent sin 9 NA
301 79.41 radiation 20.0 90 < th dose independent rect. 5 4
350 79.50 humidity 50.0 90 > th dose dependent rect. 18 11
354 79.52 radiation 40.0 90 < th dose independent rect. 13 19
360 79.56 radiation 20.0 270 < th dose independent sin 9 NA
374 79.60 radiation 30.0 270 < th dose dependent sin 8 NA
397 79.70 humidity 70.0 270 > th dose independent rect. 21 11
415 79.77 wind 7.0 270 < th dose independent rect. 9 1
419 79.78 temperature 15.0 270 > th dose independent rect. 9 1
471 79.94 wind 9.0 270 < th dose independent rect. 3 14
473 79.95 wind 1.0 270 > th dose independent rect. 11 21
497 79.99 radiation 40.0 10 < th dose dependent rect. 6 12
502 80.02 temperature 15.0 90 > th dose independent rect. 23 10
504 80.02 temperature 15.0 270 > th dose independent rect. 11 21
508 80.02 radiation 40.0 90 < th dose dependent rect. 5 4
535 80.05 atmosphere 995.0 270 > th dose independent rect. 3 14
574 80.07 wind 1.0 30 > th dose independent rect. 1 8
592 80.09 humidity 70.0 90 > th dose independent rect. 5 3
595 80.11 precipitation 0.1 270 < th dose independent rect. 17 10
596 80.11 precipitation 0.1 270 < th dose dependent rect. 17 10
613 80.17 temperature 20.0 90 > th dose dependent rect. 20 17
614 80.18 wind 7.0 90 < th dose independent rect. 8 21
616 80.19 precipitation 0.1 270 < th dose independent rect. 9 1
618 80.19 radiation 20.0 90 < th dose independent rect. 5 6
619 80.19 precipitation 0.1 270 < th dose dependent rect. 9 1
625 80.21 radiation 20.0 90 < th dose independent sin 5 NA
627 80.21 humidity 80.0 90 > th dose independent rect. 5 10
645 80.27 wind 9.0 1440 < th dose independent rect. 6 3
649 80.27 humidity 50.0 1440 > th dose independent rect. 6 3
665 80.30 atmosphere 995.0 270 > th dose independent rect. 9 1
666 80.30 atmosphere 1015.0 270 < th dose independent rect. 9 1
667 80.30 humidity 80.0 90 < th dose independent rect. 23 15
668 80.30 temperature 10.0 270 > th dose independent rect. 10 23
676 80.32 temperature 30.0 90 < th dose independent rect. 23 10
684 80.33 precipitation 0.1 90 < th dose independent rect. 14 18
688 80.33 precipitation 0.1 90 < th dose dependent rect. 14 18
693 80.35 temperature 15.0 90 > th dose independent rect. 8 6
711 80.39 wind 7.0 10 < th dose independent rect. 9 5
721 80.41 wind 1.0 270 > th dose independent rect. 9 1
723 80.42 humidity 50.0 270 > th dose independent rect. 9 1
732 80.44 humidity 50.0 270 > th dose independent rect. 7 14
735 80.46 atmosphere 995.0 270 > th dose independent rect. 17 10
744 80.48 wind 1.0 90 > th dose independent rect. 23 9
750 80.48 temperature 20.0 10 > th dose dependent rect. 20 18
751 80.49 wind 7.0 270 < th dose independent rect. 7 5
761 80.51 humidity 70.0 90 > th dose independent sin 6 NA
782 80.54 wind 9.0 270 < th dose independent rect. 7 14
793 80.56 precipitation 0.1 270 < th dose independent rect. 10 23
797 80.56 precipitation 0.1 270 < th dose dependent rect. 10 23
798 80.57 temperature 10.0 10 > th dose independent rect. 9 5
800 80.57 atmosphere 995.0 10 > th dose independent rect. 9 5
801 80.57 atmosphere 1015.0 10 < th dose independent rect. 9 5
802 80.57 precipitation 0.1 10 < th dose independent rect. 9 5
807 80.57 precipitation 0.1 10 < th dose dependent rect. 9 5
818 80.60 wind 1.0 10 > th dose independent rect. 9 5
820 80.60 wind 1.0 90 > th dose independent rect. 8 6
840 80.60 humidity 70.0 90 > th dose dependent rect. 5 10
850 80.62 precipitation 0.1 90 < th dose independent rect. 8 6
853 80.62 precipitation 0.1 90 < th dose dependent rect. 8 6
860 80.64 wind 7.0 270 < th dose independent rect. 8 3
879 80.66 temperature 15.0 270 > th dose independent rect. 8 3
911 80.69 radiation 20.0 270 > th dose independent sin 9 NA
914 80.69 wind 9.0 270 < th dose dependent rect. 7 5
939 80.73 radiation 20.0 270 < th dose dependent rect. 3 11
942 80.74 wind 9.0 270 < th dose dependent rect. 8 3
981 80.79 wind 9.0 10 < th dose independent rect. 14 19
984 80.80 radiation 20.0 90 > th dose independent sin 5 NA
993 80.81 radiation 1.0 90 < th dose dependent sin 13 NA