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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0606600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0432) R2 : 0.0742
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.13 (0.2) R2dE : 0.0724 R2E : 0.0741
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0204 (0.0949) R2dN8 : 0.000136 R2N8 : 0.00189
σ : 0.802
deviance : 296.41
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 4.43
memory length : 1465
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
273.8 0.777 3.27 0.483 0.182 1.3 2.12 -0.784 0.0482 14.9 3.684 1507 -- --
274.37 0.771 3.27 0.433 0.159 1.36 2.12 -- 0.0407 14.7 3.457 1499 -- --
281.22 0.781 3.21 0.82 0.834 1.87 -- -3.03 0.156 14.3 3.139 1721 -- --
291.05 0.795 3.27 0.465 0.339 1.49 -- -- 0.0516 14.5 3.41 1551 -- --
290.76 0.794 3.24 0.728 -- 1.18 -- -2.81 0.0998 -- 4.153 1507 -- --
295.84 0.806 3.32 0.177 7.57e-05 -- -2.37 -- -0.182 2.64 -- -- -- --
314.27 0.83 3.32 0.237 0.16 -- -- -- -0.166 20.1 -- -- -- --
291.75 0.796 3.28 0.518 -- 1.39 -- -- 0.045 -- 3.288 1461 -- --
295.95 0.801 3.28 -- 0.298 1.33 -- -- -0.00887 14.3 4.338 1551 -- --
315.68 0.83 3.32 0.236 -- -- -- -- -0.168 -- -- -- -- --
315.75 0.831 3.33 -- 0.159 -- -- -- -0.192 20.2 -- -- -- --
296.41 0.802 3.28 -- -- 1.13 -- -- -0.0204 -- 4.43 1465 -- --
317.14 0.831 3.32 -- -- -- -- -- -0.194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 268.50 wind 7 270 > th dose dependent rect. 23 6
7 269.70 wind 7 270 > th dose independent rect. 22 7
11 269.81 radiation 1 1440 > th dose independent rect. 11 19
25 270.40 radiation 1 1440 < th dose independent rect. 11 19
35 270.62 radiation 10 1440 > th dose independent rect. 10 4
57 271.24 radiation 1 1440 > th dose independent rect. 10 9
122 271.76 wind 5 270 > th dose independent rect. 1 1
124 271.79 wind 9 43200 < th dose independent rect. 16 1
143 272.24 radiation 1 1440 > th dose independent sin 18 NA
146 272.26 radiation 1 1440 < th dose independent rect. 11 16
148 272.27 radiation 1 1440 < th dose independent rect. 11 14
152 272.29 radiation 1 1440 < th dose independent rect. 11 8
153 272.29 radiation 1 1440 < th dose independent rect. 11 10
221 272.44 wind 7 720 > th dose independent rect. 19 6
234 272.50 wind 9 720 > th dose independent rect. 19 1
237 272.50 wind 9 720 > th dose dependent rect. 19 1
238 272.50 radiation 10 1440 < th dose dependent rect. 9 6
264 272.75 radiation 10 1440 < th dose dependent rect. 9 8
274 273.08 temperature 10 1440 > th dose dependent rect. 13 1
277 273.09 wind 9 43200 < th dose independent rect. 15 4
279 273.13 humidity 60 1440 > th dose dependent rect. 12 1
281 273.16 wind 9 43200 > th dose independent rect. 15 5
287 273.21 wind 7 43200 > th dose dependent rect. 16 1
294 273.29 radiation 1 1440 < th dose independent sin 18 NA
327 273.50 radiation 10 1440 < th dose dependent rect. 9 16
328 273.50 radiation 10 1440 < th dose dependent rect. 9 18
329 273.51 wind 5 720 > th dose dependent rect. 17 9
332 273.53 radiation 10 1440 < th dose dependent rect. 9 12
406 273.85 wind 9 43200 > th dose dependent rect. 14 6
414 273.94 wind 9 43200 > th dose dependent rect. 14 8
434 274.13 wind 9 43200 > th dose independent rect. 15 7
439 274.16 wind 7 720 < th dose independent rect. 17 10
447 274.20 wind 7 720 > th dose dependent rect. 19 6
455 274.26 wind 3 10 > th dose dependent rect. 4 2
457 274.26 wind 9 43200 > th dose dependent rect. 12 11
463 274.30 temperature 30 1440 < th dose dependent rect. 13 1
471 274.34 radiation 20 1440 < th dose dependent rect. 11 6
475 274.37 wind 9 43200 < th dose independent rect. 15 7
480 274.41 radiation 20 1440 < th dose dependent rect. 11 3
486 274.49 wind 9 43200 > th dose independent rect. 14 9
493 274.54 humidity 70 1440 > th dose independent rect. 12 2
530 274.74 wind 9 43200 > th dose dependent rect. 12 8
546 274.79 wind 9 43200 > th dose dependent rect. 11 15
661 275.16 humidity 90 1440 < th dose dependent rect. 12 2
688 275.29 wind 9 43200 > th dose independent rect. 12 11
744 275.46 wind 9 43200 > th dose independent rect. 12 14
747 275.47 wind 9 43200 > th dose independent rect. 16 1
751 275.48 wind 3 1440 > th dose dependent rect. 14 1
757 275.53 wind 9 43200 < th dose independent rect. 12 11
773 275.63 radiation 10 1440 < th dose dependent sin 20 NA
778 275.65 wind 9 43200 < th dose independent rect. 11 13
844 275.80 wind 9 43200 < th dose independent rect. 11 15
871 275.90 wind 7 720 < th dose independent rect. 15 14
878 275.91 temperature 25 720 < th dose independent rect. 15 8
911 276.00 humidity 70 1440 < th dose independent rect. 12 3
1000 276.17 wind 3 43200 > th dose dependent rect. 24 1