Os02g0606400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0606400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 309.41 | 0.826 | 3.01 | 0.532 | 0.0346 | 2.5 | 0.392 | 19.2 | -0.147 | 7.18 | 0.9782 | 10 | 5 | 0.777 |
| 311.65 | 0.822 | 3.02 | 0.316 | 0.0246 | 3.58 | 0.878 | -- | -0.174 | 8.77 | 1.07 | 12 | 5.02 | 0.719 |
| 307.54 | 0.817 | 3 | 0.454 | 0.0734 | 2.76 | -- | 18.9 | -0.13 | 4.54 | 0.5601 | 10 | 5.02 | 0.815 |
| 307.54 | 0.817 | 3.01 | 0.373 | 0.0763 | 4.86 | -- | -- | -0.13 | 4.32 | 1.452 | 7 | 5.15 | 0.606 |
| 304.71 | 0.813 | 3.02 | 0.519 | -- | 2.6 | -- | 19.2 | -0.139 | -- | 1.3 | 11 | 5.01 | 0.817 |
| 352.92 | 0.881 | 3.01 | 0.397 | 0.156 | -- | 0.548 | -- | -0.154 | 5.8 | -- | -- | -- | -- |
| 353.57 | 0.881 | 3.01 | 0.399 | 0.164 | -- | -- | -- | -0.157 | 4.89 | -- | -- | -- | -- |
| 307.83 | 0.821 | 3.01 | 0.374 | -- | 4.87 | -- | -- | -0.129 | -- | 1.416 | 7 | 5.15 | 0.622 |
| 311.16 | 0.826 | 3.02 | -- | 0.0812 | 4.86 | -- | -- | -0.172 | 4.43 | 1.56 | 7 | 5.14 | 0.6 |
| 354.98 | 0.88 | 3.02 | 0.405 | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
| 357.76 | 0.885 | 3.02 | -- | 0.171 | -- | -- | -- | -0.201 | 4.81 | -- | -- | -- | -- |
| 311.51 | 0.825 | 3.02 | -- | -- | 4.9 | -- | -- | -0.17 | -- | 1.416 | 7 | 5.15 | 0.622 |
| 359.31 | 0.885 | 3.03 | -- | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 325.26 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 3 | 327.15 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 18 | 1 |
| 4 | 327.15 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 18 | 1 |
| 5 | 330.50 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 7 | 333.54 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 22 | 7 |
| 21 | 337.14 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 22 | 16 |
| 26 | 337.43 | atmosphere | 995.0 | 4320 | < th | dose dependent | sin | 7 | NA |
| 34 | 338.08 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 22 | 12 |
| 36 | 338.22 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 21 | 18 |
| 56 | 338.87 | wind | 3.0 | 90 | < th | dose dependent | rect. | 19 | 2 |
| 72 | 339.44 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 79 | 339.44 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 96 | 339.63 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 13 | 1 |
| 98 | 339.68 | wind | 9.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 99 | 339.68 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 104 | 339.68 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 251 | 339.68 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 252 | 339.68 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 257 | 339.68 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 404 | 339.74 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 426 | 340.03 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 11 | 1 |
| 432 | 340.27 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 19 | 2 |
| 433 | 340.28 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 16 |
| 437 | 340.39 | wind | 3.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 449 | 340.69 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 10 |
| 453 | 340.74 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 8 |
| 455 | 340.74 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 17 |
| 456 | 340.74 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 17 |
| 478 | 341.10 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 481 | 341.13 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 11 | 4 |
| 496 | 341.35 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 8 | 9 |
| 500 | 341.43 | temperature | 20.0 | 10 | < th | dose independent | rect. | 13 | 10 |
| 514 | 341.50 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 19 | 3 |
| 532 | 341.68 | temperature | 20.0 | 10 | < th | dose independent | rect. | 9 | 14 |
| 544 | 341.82 | wind | 7.0 | 30 | < th | dose independent | rect. | 4 | 17 |
| 554 | 341.89 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 2 |
| 556 | 341.90 | wind | 1.0 | 90 | < th | dose dependent | rect. | 24 | 6 |
| 560 | 341.93 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 5 | 15 |
| 562 | 341.96 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 17 |
| 563 | 341.97 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 11 | 1 |
| 564 | 341.98 | atmosphere | 995.0 | 4320 | < th | dose independent | sin | 7 | NA |
| 565 | 341.98 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 12 | 8 |
| 568 | 341.99 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 7 |
| 569 | 341.99 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 7 |
| 570 | 341.99 | temperature | 30.0 | 30 | < th | dose independent | rect. | 21 | 7 |
| 571 | 341.99 | humidity | 50.0 | 30 | > th | dose independent | rect. | 21 | 7 |
| 574 | 341.99 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 21 | 7 |
| 575 | 341.99 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 7 |
| 580 | 341.99 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 17 |
| 582 | 341.99 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 17 |
| 585 | 341.99 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 7 |
| 595 | 342.04 | atmosphere | 1005.0 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 617 | 342.19 | wind | 9.0 | 30 | < th | dose dependent | rect. | 4 | 17 |
| 621 | 342.21 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 10 | 3 |
| 669 | 342.52 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 17 |
| 699 | 342.74 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 7 |
| 701 | 342.74 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 7 |
| 704 | 342.77 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 4 | 7 |
| 711 | 342.80 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 7 |
| 717 | 342.84 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 739 | 342.94 | atmosphere | 995.0 | 4320 | > th | dose independent | sin | 7 | NA |
| 756 | 343.02 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 4 | 17 |
| 761 | 343.04 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 21 | 7 |
| 768 | 343.07 | humidity | 90.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 774 | 343.09 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 780 | 343.12 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 5 | 1 |
| 782 | 343.12 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 5 | 1 |
| 783 | 343.13 | temperature | 25.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 787 | 343.14 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 795 | 343.18 | radiation | 10.0 | 720 | > th | dose independent | rect. | 17 | 13 |
| 798 | 343.19 | radiation | 10.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 813 | 343.20 | atmosphere | 1000.0 | 720 | < th | dose independent | sin | 21 | NA |
| 815 | 343.23 | atmosphere | 1000.0 | 720 | > th | dose independent | sin | 23 | NA |
| 816 | 343.23 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 820 | 343.25 | wind | 1.0 | 270 | > th | dose independent | rect. | 20 | 6 |
| 851 | 343.29 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 886 | 343.41 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 896 | 343.43 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 1 |
| 899 | 343.44 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 900 | 343.44 | humidity | 90.0 | 10 | < th | dose independent | rect. | 18 | 3 |
| 904 | 343.45 | wind | 1.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 912 | 343.46 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 923 | 343.49 | wind | 5.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 928 | 343.50 | radiation | 10.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 929 | 343.51 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 13 | 17 |
| 930 | 343.51 | radiation | 10.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 953 | 343.54 | radiation | 20.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 965 | 343.57 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 966 | 343.57 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 1 |
| 968 | 343.57 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 8 | 16 |
| 970 | 343.57 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 971 | 343.58 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 976 | 343.59 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 979 | 343.60 | radiation | 30.0 | 30 | < th | dose independent | rect. | 4 | 7 |
| 990 | 343.63 | wind | 9.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 991 | 343.63 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 994 | 343.63 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 998 | 343.63 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |