Os02g0603100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Fasciated ear2.
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Os02g0603100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Fasciated ear2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.16 | 0.258 | 9.21 | 1.56 | 0.684 | -0.127 | 0.0949 | 1.4 | 0.44 | 16.2 | 19.87 | 726 | -- | -- |
| 33.78 | 0.271 | 9.25 | 1.42 | 0.671 | -0.348 | -0.205 | -- | 0.41 | 16.1 | 18.5 | 2381 | -- | -- |
| 30.18 | 0.256 | 9.21 | 1.56 | 0.685 | -0.123 | -- | 1.4 | 0.44 | 16.2 | 19.88 | 711 | -- | -- |
| 31.89 | 0.263 | 9.23 | 1.67 | 0.656 | -0.748 | -- | -- | 0.482 | 16.1 | 17.5 | 9880 | -- | -- |
| 54.44 | 0.344 | 9.19 | 1.63 | -- | -0.23 | -- | 1.38 | 0.462 | -- | 20.52 | 1055 | -- | -- |
| 37.68 | 0.288 | 9.26 | 1.23 | 0.688 | -- | 0.0104 | -- | 0.334 | 16.1 | -- | -- | -- | -- |
| 37.68 | 0.287 | 9.26 | 1.23 | 0.688 | -- | -- | -- | 0.334 | 16.1 | -- | -- | -- | -- |
| 55.88 | 0.348 | 9.23 | 1.52 | -- | -0.784 | -- | -- | 0.432 | -- | 18 | 3914 | -- | -- |
| 66.31 | 0.379 | 9.27 | -- | 0.705 | 0.7 | -- | -- | 0.146 | 16.7 | 17.9 | 16095 | -- | -- |
| 63.4 | 0.372 | 9.25 | 1.21 | -- | -- | -- | -- | 0.316 | -- | -- | -- | -- | -- |
| 77.76 | 0.413 | 9.29 | -- | 0.665 | -- | -- | -- | 0.197 | 16.2 | -- | -- | -- | -- |
| 80.37 | 0.418 | 9.34 | -- | -- | 0.677 | -- | -- | -0.0506 | -- | 21.73 | 47520 | -- | -- |
| 101.73 | 0.471 | 9.28 | -- | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 4 | 29.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 6 | 29.81 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 21 |
| 25 | 30.02 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 26 | 30.04 | temperature | 20 | 720 | < th | dose independent | rect. | 13 | 21 |
| 31 | 30.06 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 34 | 30.07 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 66 | 30.14 | radiation | 20 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 74 | 30.16 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 22 |
| 84 | 30.18 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 85 | 30.18 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 95 | 30.19 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 23 |
| 110 | 30.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 116 | 30.23 | radiation | 20 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 137 | 30.26 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 23 |
| 161 | 30.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 181 | 30.38 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 186 | 30.39 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 23 |
| 195 | 30.41 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 213 | 30.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 217 | 30.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 230 | 30.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 21 |
| 243 | 30.48 | radiation | 20 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 245 | 30.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 266 | 30.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 21 |
| 283 | 30.55 | radiation | 40 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 302 | 30.57 | radiation | 40 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 304 | 30.57 | radiation | 40 | 4320 | < th | dose independent | rect. | 18 | 15 |
| 327 | 30.59 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 368 | 30.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 369 | 30.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 372 | 30.63 | radiation | 40 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 381 | 30.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 403 | 30.65 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 419 | 30.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 430 | 30.68 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 438 | 30.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 462 | 30.70 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 497 | 30.73 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 521 | 30.75 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 545 | 30.77 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 573 | 30.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 574 | 30.80 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 582 | 30.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 624 | 30.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 690 | 30.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 16 |
| 733 | 30.91 | temperature | 15 | 1440 | > th | dose dependent | sin | 17 | NA |
| 769 | 30.93 | radiation | 20 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 777 | 30.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 778 | 30.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 14 | 10 |
| 878 | 30.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 936 | 30.99 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 986 | 31.01 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |