Os02g0603000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0603000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.07 | 0.623 | 3.66 | 1.34 | 1.03 | -1.14 | 0.497 | -1.18 | 0.345 | 11.5 | 69.94 | 4331 | -- | -- |
| 177.95 | 0.621 | 3.65 | 1.4 | 1.04 | -1.22 | 0.489 | -- | 0.371 | 11.5 | 70 | 4340 | -- | -- |
| 177.14 | 0.62 | 3.66 | 1.36 | 1.03 | -1.15 | -- | -1.17 | 0.348 | 11.5 | 69.97 | 4331 | -- | -- |
| 178.96 | 0.623 | 3.65 | 1.4 | 1.04 | -1.24 | -- | -- | 0.369 | 11.5 | 70 | 4340 | -- | -- |
| 223.05 | 0.696 | 3.69 | 1.47 | -- | -1.27 | -- | -0.775 | 0.251 | -- | 72 | 2450 | -- | -- |
| 202.72 | 0.667 | 3.68 | 1.38 | 1.04 | -- | 0.599 | -- | 0.25 | 11.6 | -- | -- | -- | -- |
| 204.28 | 0.669 | 3.68 | 1.41 | 1.04 | -- | -- | -- | 0.253 | 11.6 | -- | -- | -- | -- |
| 210.46 | 0.676 | 3.67 | 1.37 | -- | -1.78 | -- | -- | 0.389 | -- | 79.1 | 2467 | -- | -- |
| 205.59 | 0.668 | 3.69 | -- | 0.976 | -1.4 | -- | -- | 0.223 | 11.8 | 65 | 30200 | -- | -- |
| 271.63 | 0.77 | 3.7 | 1.38 | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
| 256.41 | 0.749 | 3.71 | -- | 1.02 | -- | -- | -- | 0.0963 | 11.5 | -- | -- | -- | -- |
| 252.41 | 0.74 | 3.67 | -- | -- | -1.88 | -- | -- | 0.369 | -- | 84 | 2404 | -- | -- |
| 321.69 | 0.837 | 3.74 | -- | -- | -- | -- | -- | 0.0881 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.04 | humidity | 70 | 4320 | < th | dose independent | rect. | 9 | 7 |
| 2 | 172.08 | humidity | 80 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 3 | 172.13 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 8 | 172.70 | humidity | 70 | 4320 | > th | dose independent | rect. | 9 | 7 |
| 16 | 173.42 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 19 | 173.54 | humidity | 70 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 41 | 173.93 | humidity | 70 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 47 | 174.02 | humidity | 70 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 51 | 174.17 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 21 |
| 59 | 174.42 | humidity | 80 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 67 | 174.54 | humidity | 70 | 4320 | > th | dose independent | rect. | 24 | 16 |
| 100 | 174.76 | humidity | 70 | 4320 | < th | dose independent | rect. | 9 | 11 |
| 112 | 174.82 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 120 | 174.95 | radiation | 1 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 139 | 175.00 | radiation | 40 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 178 | 175.11 | humidity | 70 | 4320 | < th | dose independent | sin | 23 | NA |
| 186 | 175.14 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 194 | 175.22 | humidity | 70 | 4320 | > th | dose independent | rect. | 9 | 11 |
| 200 | 175.25 | humidity | 70 | 4320 | > th | dose independent | rect. | 9 | 17 |
| 233 | 175.57 | humidity | 70 | 4320 | > th | dose independent | sin | 23 | NA |
| 372 | 176.12 | humidity | 70 | 4320 | < th | dose independent | no | NA | NA |
| 418 | 176.12 | humidity | 70 | 14400 | > th | dose dependent | sin | 4 | NA |
| 419 | 176.13 | radiation | 30 | 4320 | > th | dose independent | rect. | 16 | 17 |
| 462 | 176.28 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 473 | 176.33 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 8 |
| 511 | 176.40 | humidity | 70 | 4320 | > th | dose independent | rect. | 24 | 20 |
| 534 | 176.44 | humidity | 70 | 4320 | > th | dose independent | no | NA | NA |
| 591 | 176.51 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 8 |
| 617 | 176.60 | humidity | 70 | 4320 | < th | dose independent | rect. | 14 | 23 |
| 652 | 176.68 | humidity | 70 | 14400 | > th | dose dependent | rect. | 21 | 18 |
| 664 | 176.70 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 19 |
| 679 | 176.73 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 18 |
| 686 | 176.75 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 690 | 176.76 | humidity | 70 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 707 | 176.80 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 711 | 176.81 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 725 | 176.83 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 5 |
| 731 | 176.84 | humidity | 70 | 4320 | > th | dose independent | rect. | 14 | 23 |
| 756 | 176.89 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 776 | 176.92 | humidity | 70 | 14400 | > th | dose dependent | rect. | 15 | 21 |
| 790 | 176.95 | humidity | 70 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 812 | 176.98 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 829 | 176.99 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 841 | 177.01 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 886 | 177.07 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 15 |
| 901 | 177.08 | humidity | 70 | 14400 | > th | dose dependent | no | NA | NA |