Os02g0602800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Got1-like protein family protein.
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Os02g0602800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Got1-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.61 | 0.197 | 10.7 | 0.661 | 0.276 | -0.825 | -0.313 | 0.0179 | 0.268 | 20.7 | 19.22 | 126 | -- | -- |
| 17.58 | 0.195 | 10.7 | 0.657 | 0.288 | -0.824 | -0.307 | -- | 0.266 | 20.8 | 19.21 | 142 | -- | -- |
| 17.85 | 0.197 | 10.7 | 0.689 | 0.308 | -0.838 | -- | 0.0794 | 0.274 | 20.7 | 19.22 | 167 | -- | -- |
| 17.85 | 0.197 | 10.7 | 0.674 | 0.309 | -0.834 | -- | -- | 0.269 | 20.8 | 19.04 | 174 | -- | -- |
| 20.67 | 0.213 | 10.7 | 0.695 | -- | -0.866 | -- | 0.19 | 0.281 | -- | 19 | 70 | -- | -- |
| 28.39 | 0.25 | 10.8 | 0.476 | 0.363 | -- | -0.167 | -- | 0.128 | 0.212 | -- | -- | -- | -- |
| 28.51 | 0.25 | 10.8 | 0.482 | 0.364 | -- | -- | -- | 0.129 | 0.287 | -- | -- | -- | -- |
| 20.68 | 0.212 | 10.7 | 0.67 | -- | -0.864 | -- | -- | 0.276 | -- | 18.7 | 3 | -- | -- |
| 28.32 | 0.248 | 10.8 | -- | 0.306 | -0.565 | -- | -- | 0.157 | 21.7 | 22.23 | 184 | -- | -- |
| 36.85 | 0.284 | 10.8 | 0.494 | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
| 34.63 | 0.275 | 10.8 | -- | 0.371 | -- | -- | -- | 0.0751 | 0.356 | -- | -- | -- | -- |
| 31.41 | 0.262 | 10.8 | -- | -- | -0.694 | -- | -- | 0.171 | -- | 21.8 | 4 | -- | -- |
| 43.28 | 0.307 | 10.8 | -- | -- | -- | -- | -- | 0.0796 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.07 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 2 | 17.12 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 4 | 17.15 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 11 | 17.48 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 16 | 17.53 | temperature | 10.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 41 | 17.71 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 44 | 17.76 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 59 | 17.85 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 64 | 17.88 | temperature | 30.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 65 | 17.88 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 113 | 18.14 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 145 | 18.33 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 151 | 18.35 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 219 | 18.52 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 230 | 18.56 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 8 | 18 |
| 605 | 19.09 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 641 | 19.12 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 832 | 19.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 913 | 19.28 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 914 | 19.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 917 | 19.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 983 | 19.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 13 |