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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0602700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.63 (0.0337) R2 : 0.363
β1 : 1.16 (0.123) R2dD : 0.128 R2D : 0.0219
β2 : 0.726 (0.0848) R2dC : 0.103 R2C : 0.0634
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.795 (0.072) R2dN8 : 0.229 R2N8 : 0.127
σ : 0.634
deviance : 183.26
__
_____
C
peak time of C : 3.53
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
158.73 0.592 4.62 1.05 0.74 -0.742 0.775 -2.56 0.839 3.48 69.61 4364 -- --
166.44 0.601 4.6 1.27 0.747 -0.731 0.912 -- 0.907 3.4 70.31 2887 -- --
159.71 0.589 4.63 1.06 0.69 -0.68 -- -2.78 0.804 3.3 68.54 4696 -- --
168.92 0.605 4.61 1.25 0.752 -0.705 -- -- 0.887 3.5 70.93 2886 -- --
185.81 0.635 4.63 1.1 -- -0.873 -- -2.4 0.834 -- 68 4752 -- --
181.64 0.632 4.63 1.17 0.722 -- 0.721 -- 0.799 3.49 -- -- -- --
183.26 0.634 4.63 1.16 0.726 -- -- -- 0.795 3.53 -- -- -- --
184.83 0.633 4.62 1.17 -- -0.876 -- -- 0.885 -- 74 1823 -- --
201.93 0.662 4.56 -- 0.71 -0.953 -- -- 1.01 3.63 75 7207 -- --
212.69 0.681 4.63 1.19 -- -- -- -- 0.814 -- -- -- -- --
218.78 0.692 4.66 -- 0.749 -- -- -- 0.666 3.53 -- -- -- --
220.71 0.692 4.63 -- -- -1.36 -- -- 0.87 -- 83.26 1841 -- --
250.14 0.738 4.66 -- -- -- -- -- 0.682 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 150.09 precipitation 0.1 14400 > th dose independent rect. 17 1
2 150.35 precipitation 0.1 14400 < th dose independent rect. 17 1
3 150.35 precipitation 0.1 14400 < th dose dependent rect. 17 1
4 150.98 humidity 80.0 1440 < th dose independent rect. 11 1
5 150.99 humidity 80.0 1440 > th dose independent rect. 11 1
6 151.58 precipitation 0.1 14400 > th dose dependent rect. 17 1
7 152.73 precipitation 0.1 14400 < th dose independent rect. 9 8
8 152.73 precipitation 0.1 14400 < th dose dependent rect. 9 8
9 152.76 precipitation 0.1 14400 > th dose independent rect. 9 8
10 152.91 precipitation 0.1 14400 > th dose independent rect. 15 1
11 152.91 precipitation 0.1 14400 > th dose dependent rect. 15 1
12 152.99 precipitation 0.1 14400 < th dose independent rect. 15 1
13 152.99 precipitation 0.1 14400 < th dose dependent rect. 15 1
14 153.24 precipitation 0.1 14400 > th dose dependent rect. 9 8
16 153.32 precipitation 0.1 14400 > th dose independent rect. 11 6
17 153.32 wind 3.0 43200 < th dose dependent rect. 1 2
30 153.41 precipitation 0.1 14400 > th dose dependent rect. 7 10
41 153.84 wind 3.0 14400 < th dose independent rect. 24 4
47 153.97 humidity 70.0 1440 > th dose dependent rect. 11 1
48 154.00 wind 3.0 14400 < th dose independent rect. 24 2
55 154.22 humidity 80.0 14400 > th dose independent rect. 13 1
57 154.26 wind 9.0 14400 < th dose independent rect. 7 4
59 154.34 wind 9.0 14400 < th dose independent rect. 10 1
61 154.49 wind 5.0 14400 < th dose dependent rect. 24 4
67 154.71 wind 3.0 14400 < th dose independent rect. 22 7
76 154.78 precipitation 0.1 4320 > th dose dependent rect. 1 16
80 154.90 wind 3.0 43200 < th dose dependent rect. 23 8
83 154.93 wind 1.0 14400 > th dose dependent rect. 24 4
85 154.98 wind 3.0 14400 > th dose independent rect. 24 2
86 154.98 precipitation 0.1 1440 > th dose dependent rect. 5 3
89 155.00 wind 3.0 14400 > th dose independent rect. 24 4
90 155.01 precipitation 0.1 4320 < th dose independent rect. 1 16
91 155.01 precipitation 0.1 4320 < th dose dependent rect. 1 16
94 155.06 precipitation 0.1 4320 > th dose independent rect. 1 16
95 155.08 precipitation 0.1 14400 > th dose independent rect. 5 15
96 155.09 precipitation 0.1 14400 < th dose independent rect. 5 15
97 155.09 precipitation 0.1 14400 < th dose dependent rect. 5 15
98 155.11 precipitation 0.1 14400 < th dose independent rect. 7 13
99 155.11 precipitation 0.1 14400 < th dose dependent rect. 7 13
108 155.23 precipitation 0.1 14400 < th dose independent rect. 9 11
110 155.23 precipitation 0.1 14400 < th dose dependent rect. 9 11
113 155.25 precipitation 0.1 14400 < th dose independent rect. 19 1
115 155.25 precipitation 0.1 14400 > th dose independent rect. 9 11
116 155.25 precipitation 0.1 14400 < th dose dependent rect. 19 1
119 155.27 precipitation 0.1 14400 > th dose independent rect. 19 1
141 155.48 wind 3.0 14400 > th dose independent rect. 22 7
150 155.58 precipitation 0.1 14400 > th dose dependent rect. 19 1
155 155.60 precipitation 0.1 14400 > th dose independent rect. 12 8
156 155.60 precipitation 0.1 14400 < th dose independent rect. 12 8
157 155.60 precipitation 0.1 14400 < th dose dependent rect. 12 8
166 155.66 precipitation 0.1 1440 > th dose independent rect. 5 2
173 155.67 wind 1.0 14400 > th dose dependent rect. 23 6
179 155.71 precipitation 0.1 14400 < th dose independent sin 1 NA
180 155.71 precipitation 0.1 14400 < th dose dependent sin 1 NA
181 155.72 precipitation 0.1 14400 > th dose independent sin 1 NA
191 155.76 humidity 80.0 14400 > th dose dependent rect. 13 1
205 155.88 humidity 80.0 1440 < th dose independent rect. 5 7
229 156.02 humidity 80.0 1440 > th dose independent rect. 5 7
230 156.03 humidity 80.0 14400 < th dose independent rect. 13 1
262 156.19 wind 1.0 4320 > th dose independent rect. 17 2
267 156.20 precipitation 0.1 1440 > th dose dependent rect. 5 8
275 156.28 precipitation 0.1 1440 > th dose dependent rect. 5 6
314 156.57 wind 9.0 14400 > th dose independent rect. 10 1
340 156.78 precipitation 0.1 14400 > th dose dependent sin 2 NA
344 156.79 wind 9.0 14400 > th dose independent rect. 7 4
352 156.82 wind 3.0 43200 < th dose independent rect. 6 1
359 156.87 precipitation 0.1 1440 < th dose independent rect. 5 1
362 156.87 precipitation 0.1 1440 < th dose dependent rect. 5 1
377 156.92 precipitation 0.1 14400 > th dose dependent rect. 1 19
395 156.97 wind 3.0 14400 < th dose dependent rect. 4 1
443 157.22 humidity 70.0 1440 > th dose dependent rect. 4 8
469 157.33 humidity 80.0 14400 > th dose dependent rect. 16 1
471 157.34 precipitation 0.1 1440 > th dose independent rect. 5 8
481 157.38 wind 3.0 43200 > th dose independent rect. 5 2
491 157.42 precipitation 0.1 1440 > th dose independent rect. 5 6
502 157.45 precipitation 0.1 1440 < th dose independent rect. 5 3
506 157.45 precipitation 0.1 1440 < th dose dependent rect. 5 3
524 157.54 humidity 80.0 14400 > th dose independent rect. 10 7
549 157.62 precipitation 0.1 4320 > th dose dependent rect. 18 23
593 157.80 precipitation 0.1 14400 > th dose dependent rect. 5 15
695 158.11 humidity 70.0 4320 < th dose independent rect. 15 22
696 158.11 precipitation 0.1 14400 > th dose dependent rect. 13 7
702 158.13 precipitation 0.1 14400 > th dose dependent rect. 5 1
717 158.16 humidity 70.0 4320 < th dose independent rect. 18 22
721 158.17 humidity 80.0 14400 > th dose dependent rect. 9 8
757 158.26 precipitation 0.1 14400 > th dose dependent rect. 9 11
797 158.37 precipitation 0.1 14400 > th dose independent rect. 5 1
807 158.39 humidity 90.0 14400 > th dose independent rect. 20 1
809 158.39 humidity 90.0 4320 > th dose dependent rect. 7 3
823 158.43 precipitation 0.1 1440 < th dose independent rect. 5 6
827 158.43 precipitation 0.1 1440 < th dose dependent rect. 5 6
843 158.46 humidity 70.0 4320 < th dose independent rect. 18 19
924 158.64 humidity 70.0 4320 > th dose independent rect. 15 22
943 158.68 wind 1.0 43200 > th dose dependent rect. 5 2
957 158.71 humidity 70.0 4320 < th dose independent rect. 9 12