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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0601400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.5 (0.038) R2 : 0.153
β1 : 0.807 (0.145) R2dD : 0.0665 R2D : -0.0137
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.52 (0.177) R2dE : 0.162 R2E : 0.062
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.33 (0.0847) R2dN8 : 0.0423 R2N8 : -0.0229
σ : 0.702
deviance : 226.88
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 11.75
memory length : 796
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
214.68 0.688 3.42 1.36 0.452 -1.16 0.256 2.68 0.466 9.84 16.08 1148 -- --
220.96 0.692 3.5 0.839 0.462 -1.18 0.0758 -- 0.322 9.7 5.484 1114 -- --
214.91 0.683 3.42 1.35 0.463 -1.15 -- 2.57 0.459 9.91 16.08 1177 -- --
220.6 0.692 3.5 0.775 0.462 -1.19 -- -- 0.307 9.89 7.276 1174 -- --
222.36 0.695 3.43 1.28 -- -1.47 -- 2.4 0.492 -- 15.96 842 -- --
242.73 0.73 3.54 0.422 0.577 -- -0.0534 -- 0.098 10.6 -- -- -- --
242.74 0.73 3.54 0.42 0.577 -- -- -- 0.0978 10.6 -- -- -- --
226.88 0.702 3.5 0.807 -- -1.52 -- -- 0.33 -- 11.75 796 -- --
233.55 0.716 3.52 -- 0.799 -1.14 -- -- 0.186 11.9 2.928 1149 -- --
263.25 0.758 3.56 0.409 -- -- -- -- 0.095 -- -- -- -- --
247.39 0.736 3.55 -- 0.574 -- -- -- 0.051 10.6 -- -- -- --
242.11 0.725 3.53 -- -- -1.21 -- -- 0.2 -- 8.981 743 -- --
267.67 0.764 3.57 -- -- -- -- -- 0.0496 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.35 humidity 90.0 14400 > th dose dependent rect. 22 1
2 205.76 humidity 90.0 14400 > th dose dependent rect. 21 3
3 205.78 atmosphere 995.0 43200 > th dose independent rect. 13 9
4 206.39 atmosphere 995.0 43200 < th dose independent rect. 13 9
9 206.87 atmosphere 995.0 43200 < th dose independent rect. 15 1
10 207.09 atmosphere 995.0 43200 > th dose independent rect. 15 1
11 207.17 atmosphere 995.0 43200 < th dose dependent rect. 15 7
12 207.47 atmosphere 995.0 43200 < th dose dependent rect. 15 2
13 207.51 atmosphere 995.0 43200 > th dose independent rect. 14 3
15 207.57 atmosphere 995.0 43200 > th dose independent rect. 11 12
16 207.59 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
21 207.76 atmosphere 1000.0 43200 < th dose dependent rect. 11 4
24 207.86 atmosphere 995.0 43200 > th dose independent sin 20 NA
28 207.92 atmosphere 995.0 43200 < th dose independent rect. 14 3
29 207.96 atmosphere 995.0 43200 > th dose independent rect. 13 6
43 208.05 wind 9.0 43200 > th dose dependent rect. 17 15
54 208.23 wind 9.0 4320 < th dose independent rect. 16 2
70 208.56 wind 9.0 43200 > th dose dependent sin 13 NA
74 208.61 atmosphere 995.0 43200 < th dose independent sin 20 NA
78 208.67 wind 9.0 4320 > th dose independent rect. 17 1
90 208.90 wind 9.0 43200 > th dose dependent rect. 13 20
93 208.93 wind 9.0 43200 > th dose independent rect. 17 16
97 208.96 wind 9.0 4320 > th dose dependent rect. 16 2
105 209.09 humidity 80.0 14400 > th dose dependent rect. 18 11
131 209.46 atmosphere 995.0 43200 > th dose independent rect. 4 15
168 209.79 humidity 90.0 14400 < th dose independent rect. 21 1
191 210.02 wind 9.0 43200 < th dose independent rect. 17 16
202 210.09 atmosphere 995.0 43200 < th dose independent rect. 4 15
208 210.11 humidity 90.0 14400 < th dose independent rect. 18 1
263 210.50 wind 9.0 43200 > th dose dependent sin 19 NA
272 210.55 wind 9.0 43200 > th dose independent sin 11 NA
280 210.58 wind 9.0 43200 > th dose dependent rect. 9 12
301 210.69 wind 9.0 43200 > th dose dependent rect. 9 22
315 210.75 wind 9.0 43200 > th dose dependent rect. 9 15
316 210.76 humidity 90.0 14400 > th dose independent rect. 21 2
321 210.76 wind 9.0 43200 > th dose dependent rect. 9 18
391 211.23 humidity 90.0 43200 < th dose independent rect. 13 2
416 211.29 precipitation 0.1 1440 > th dose dependent rect. 6 12
420 211.31 wind 9.0 43200 > th dose independent rect. 17 21
423 211.31 wind 9.0 43200 > th dose dependent rect. 2 19
439 211.36 wind 9.0 43200 > th dose dependent rect. 20 1
441 211.36 wind 9.0 43200 > th dose dependent rect. 17 23
453 211.43 precipitation 0.1 1440 > th dose dependent rect. 9 9
455 211.44 precipitation 0.1 1440 < th dose independent rect. 14 4
457 211.44 precipitation 0.1 1440 < th dose dependent rect. 14 4
481 211.48 wind 9.0 43200 > th dose dependent rect. 17 7
489 211.51 humidity 80.0 14400 > th dose dependent sin 12 NA
511 211.56 wind 9.0 43200 > th dose dependent rect. 20 23
514 211.57 wind 9.0 43200 > th dose dependent no NA NA
522 211.60 humidity 90.0 14400 < th dose independent rect. 18 5
541 211.64 wind 9.0 43200 < th dose independent rect. 14 21
595 211.93 humidity 90.0 14400 < th dose independent rect. 10 1
607 212.05 wind 9.0 43200 < th dose independent sin 11 NA
622 212.12 precipitation 0.1 1440 > th dose independent rect. 15 3
638 212.17 humidity 90.0 14400 < th dose independent rect. 17 8
667 212.31 temperature 15.0 720 > th dose dependent rect. 17 17
668 212.32 humidity 90.0 14400 < th dose independent rect. 17 10
687 212.41 precipitation 0.1 1440 > th dose dependent rect. 13 5
703 212.54 humidity 90.0 14400 < th dose independent rect. 17 12
714 212.61 temperature 15.0 1440 > th dose dependent rect. 21 12
717 212.64 wind 9.0 43200 > th dose dependent rect. 20 4
724 212.69 wind 9.0 43200 < th dose independent rect. 17 21
727 212.69 temperature 15.0 1440 > th dose dependent rect. 18 15
730 212.70 temperature 15.0 1440 > th dose dependent rect. 24 9
731 212.71 temperature 30.0 1440 < th dose dependent rect. 21 12
739 212.74 atmosphere 1000.0 43200 < th dose dependent sin 23 NA
753 212.77 temperature 30.0 1440 < th dose dependent rect. 18 15
766 212.81 humidity 50.0 14400 > th dose dependent rect. 21 7
775 212.84 temperature 30.0 1440 < th dose dependent rect. 24 9
807 212.90 wind 9.0 43200 > th dose dependent rect. 20 12
817 212.92 wind 9.0 43200 > th dose independent rect. 20 4
843 212.98 temperature 15.0 1440 > th dose dependent rect. 21 6
872 213.05 temperature 30.0 1440 < th dose dependent rect. 21 6
907 213.11 temperature 15.0 1440 > th dose dependent sin 10 NA
910 213.11 temperature 15.0 1440 > th dose dependent rect. 18 10
922 213.13 wind 9.0 43200 > th dose independent rect. 18 6
937 213.15 temperature 15.0 1440 > th dose dependent rect. 24 1
949 213.17 wind 9.0 43200 > th dose independent rect. 18 11
952 213.17 temperature 30.0 1440 < th dose dependent rect. 18 10
979 213.21 wind 9.0 43200 > th dose independent rect. 18 9
987 213.22 temperature 15.0 1440 > th dose dependent rect. 5 4