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Os02g0601100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nucleotide-binding protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.014) R2 : 0.00192
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0276 (0.0294) R2dN8 : 0.00248 R2N8 : 0.00192
σ : 0.263
deviance : 31.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.14 0.216 12.3 -0.312 0.235 -0.309 -0.0817 -0.451 -0.0244 8.97 83 1121 -- --
21.38 0.215 12.3 -0.29 0.238 -0.308 -0.00552 -- -0.0122 9.11 81 1093 -- --
21.16 0.214 12.3 -0.308 0.237 -0.306 -- -0.403 -0.0245 9.1 82.03 1125 -- --
21.34 0.215 12.3 -0.27 0.222 -0.348 -- -- -0.0232 9.11 81 1076 -- --
22.67 0.222 12.3 -0.283 -- -0.467 -- -0.154 -0.0232 -- 85.95 885 -- --
23.63 0.228 12.3 -0.33 0.298 -- 0.124 -- -0.00913 9.89 -- -- -- --
23.69 0.228 12.3 -0.325 0.298 -- -- -- -0.00913 9.78 -- -- -- --
22.7 0.222 12.3 -0.271 -- -0.485 -- -- -0.0162 -- 85.63 885 -- --
23.22 0.224 12.3 -- 0.222 -0.399 -- -- 0.00664 9.01 79.84 1099 -- --
28.99 0.252 12.3 -0.328 -- -- -- -- -0.00886 -- -- -- -- --
26.48 0.241 12.3 -- 0.299 -- -- -- 0.0271 9.86 -- -- -- --
24.58 0.231 12.3 -- -- -0.535 -- -- 0.00128 -- 83 908 -- --
31.83 0.263 12.3 -- -- -- -- -- 0.0276 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.76 temperature 20.0 90 > th dose independent rect. 19 20
3 20.85 humidity 80.0 1440 < th dose independent rect. 24 14
7 20.90 humidity 80.0 1440 > th dose independent rect. 1 13
8 20.90 humidity 60.0 720 > th dose independent rect. 17 14
15 20.94 radiation 10.0 720 < th dose independent rect. 15 8
18 20.95 temperature 20.0 90 > th dose independent rect. 19 9
26 20.99 humidity 80.0 1440 < th dose independent sin 5 NA
52 21.07 humidity 80.0 1440 > th dose independent sin 4 NA
58 21.07 temperature 10.0 90 > th dose dependent rect. 19 20
68 21.09 humidity 80.0 720 < th dose dependent sin 12 NA
75 21.11 temperature 30.0 720 < th dose independent rect. 18 11
79 21.11 humidity 50.0 720 > th dose dependent rect. 15 15
85 21.12 humidity 50.0 720 > th dose dependent rect. 17 13
99 21.15 humidity 80.0 720 < th dose dependent rect. 15 16
168 21.23 humidity 50.0 720 > th dose dependent rect. 17 20
170 21.24 humidity 60.0 720 > th dose independent rect. 17 6
183 21.24 humidity 50.0 720 > th dose dependent rect. 11 19
204 21.26 radiation 10.0 720 < th dose independent rect. 14 16
205 21.26 humidity 50.0 720 > th dose dependent rect. 17 5
209 21.26 humidity 50.0 720 > th dose dependent rect. 2 18
224 21.27 temperature 10.0 270 > th dose dependent rect. 19 18
230 21.28 temperature 20.0 10 > th dose independent rect. 20 9
248 21.29 humidity 60.0 720 > th dose dependent rect. 19 1
258 21.30 temperature 30.0 720 < th dose independent rect. 17 13
263 21.30 humidity 80.0 720 > th dose independent rect. 9 21
264 21.30 humidity 80.0 720 > th dose independent rect. 18 21
274 21.31 humidity 50.0 720 > th dose dependent rect. 18 3
292 21.32 humidity 50.0 270 > th dose independent rect. 17 22
301 21.33 radiation 30.0 90 < th dose independent rect. 15 4
368 21.37 humidity 70.0 720 > th dose independent sin 14 NA
378 21.37 humidity 50.0 720 > th dose dependent sin 14 NA
382 21.37 humidity 90.0 720 < th dose dependent rect. 14 5
388 21.38 atmosphere 995.0 90 > th dose independent rect. 15 4
389 21.38 radiation 1.0 270 > th dose independent rect. 14 5
394 21.38 temperature 25.0 270 < th dose independent rect. 23 9
404 21.38 humidity 50.0 720 > th dose independent rect. 11 18
413 21.39 humidity 60.0 720 > th dose independent sin 11 NA
437 21.39 radiation 1.0 90 < th dose dependent rect. 19 20
462 21.41 precipitation 0.1 90 < th dose independent rect. 15 4
463 21.41 temperature 30.0 720 < th dose independent rect. 17 5
479 21.41 precipitation 0.1 90 < th dose dependent rect. 15 4
504 21.43 humidity 80.0 1440 > th dose independent rect. 11 2
505 21.43 radiation 1.0 270 > th dose independent rect. 15 2
506 21.43 radiation 30.0 14400 < th dose independent rect. 17 3
512 21.43 humidity 80.0 720 > th dose independent rect. 2 20
513 21.43 humidity 50.0 90 > th dose independent rect. 19 20
514 21.43 radiation 40.0 90 < th dose dependent rect. 15 4
529 21.44 wind 9.0 90 < th dose independent rect. 19 20
564 21.46 wind 1.0 90 > th dose independent rect. 15 4
565 21.46 wind 9.0 14400 < th dose independent rect. 5 6
593 21.46 radiation 1.0 90 < th dose dependent rect. 19 22
630 21.48 humidity 80.0 720 < th dose independent rect. 23 23
631 21.48 humidity 90.0 1440 < th dose dependent sin 5 NA
632 21.48 radiation 1.0 270 > th dose dependent rect. 15 4
638 21.48 temperature 30.0 270 < th dose dependent rect. 23 9
653 21.49 atmosphere 995.0 270 > th dose independent rect. 15 2
669 21.49 wind 9.0 270 < th dose independent rect. 17 22
682 21.49 humidity 90.0 1440 < th dose dependent rect. 2 12
693 21.50 precipitation 0.1 270 < th dose independent rect. 15 2
695 21.50 temperature 10.0 90 > th dose independent rect. 15 4
698 21.50 atmosphere 1010.0 90 < th dose independent rect. 15 4
715 21.50 humidity 80.0 720 < th dose independent rect. 7 23
716 21.50 humidity 80.0 720 < th dose independent rect. 12 23
719 21.50 precipitation 0.1 270 < th dose dependent rect. 15 2
721 21.50 wind 9.0 90 < th dose dependent rect. 15 4
754 21.51 radiation 10.0 720 < th dose dependent rect. 14 9
774 21.52 humidity 70.0 1440 > th dose dependent rect. 10 3
775 21.52 atmosphere 995.0 90 > th dose dependent rect. 15 4
776 21.52 humidity 70.0 1440 > th dose dependent rect. 9 5
778 21.52 temperature 15.0 90 > th dose dependent rect. 19 9
790 21.53 humidity 80.0 720 < th dose independent no NA NA
791 21.53 wind 9.0 90 < th dose independent rect. 15 4
796 21.53 humidity 50.0 270 > th dose independent rect. 9 14
807 21.53 humidity 80.0 720 < th dose independent rect. 3 23
809 21.53 humidity 60.0 1440 > th dose dependent rect. 10 1
825 21.54 temperature 30.0 720 < th dose independent rect. 18 3
845 21.54 radiation 1.0 90 < th dose independent rect. 19 20
848 21.54 humidity 50.0 720 > th dose independent rect. 9 22
884 21.55 temperature 20.0 270 > th dose independent rect. 9 14
910 21.55 temperature 10.0 270 > th dose dependent rect. 15 2
912 21.55 humidity 90.0 270 < th dose dependent rect. 15 2
929 21.55 radiation 20.0 720 < th dose dependent rect. 14 16
940 21.56 humidity 70.0 720 < th dose independent rect. 15 5
955 21.56 humidity 80.0 720 < th dose independent rect. 12 15
963 21.56 humidity 80.0 720 < th dose independent rect. 14 18
965 21.56 atmosphere 995.0 90 > th dose independent rect. 19 20
973 21.56 humidity 80.0 1440 < th dose dependent sin 9 NA
981 21.56 humidity 50.0 1440 > th dose dependent rect. 2 12
998 21.57 wind 1.0 270 > th dose independent rect. 15 2
999 21.57 temperature 10.0 270 > th dose independent rect. 15 2