Os02g0601000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0601000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 226.81 | 0.708 | 7.26 | 1.42 | 0.969 | -1.61 | -0.0933 | 3.39 | -0.576 | 21 | 26.19 | 4940 | -- | -- |
| 237.84 | 0.718 | 7.29 | 1.1 | 0.864 | -1.57 | -0.36 | -- | -0.325 | 20.8 | 23.6 | 16414 | -- | -- |
| 226.79 | 0.701 | 7.26 | 1.43 | 0.961 | -1.61 | -- | 3.42 | -0.576 | 21 | 26.2 | 4902 | -- | -- |
| 236.86 | 0.717 | 7.28 | 1.06 | 0.887 | -1.57 | -- | -- | -0.303 | 20.9 | 23.4 | 16421 | -- | -- |
| 270.94 | 0.767 | 7.23 | 1.44 | -- | -1.53 | -- | 3.3 | -0.552 | -- | 27.1 | 5857 | -- | -- |
| 290.27 | 0.799 | 7.45 | -0.0933 | 0.842 | -- | -0.0881 | -- | -1.09 | 21 | -- | -- | -- | -- |
| 290.3 | 0.798 | 7.45 | -0.0903 | 0.842 | -- | -- | -- | -1.09 | 21 | -- | -- | -- | -- |
| 279.11 | 0.778 | 7.24 | 0.981 | -- | -1.5 | -- | -- | -0.299 | -- | 23.57 | 15851 | -- | -- |
| 247.16 | 0.732 | 7.33 | -- | 0.738 | -1.09 | -- | -- | -0.615 | 21.1 | 23.7 | 10303 | -- | -- |
| 331.08 | 0.85 | 7.42 | -0.089 | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
| 290.51 | 0.797 | 7.45 | -- | 0.842 | -- | -- | -- | -1.08 | 21 | -- | -- | -- | -- |
| 287.59 | 0.79 | 7.33 | -- | -- | -1.05 | -- | -- | -0.668 | -- | 23.6 | 10123 | -- | -- |
| 331.29 | 0.85 | 7.42 | -- | -- | -- | -- | -- | -1.09 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.30 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 2 | 219.42 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 17 |
| 3 | 219.63 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 6 | 219.95 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 12 | 221.51 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 18 | 222.29 | temperature | 25 | 90 | > th | dose independent | sin | 20 | NA |
| 21 | 222.49 | humidity | 80 | 43200 | > th | dose dependent | sin | 17 | NA |
| 25 | 222.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 30 | 223.28 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 15 |
| 32 | 223.35 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 41 | 223.50 | humidity | 80 | 43200 | > th | dose dependent | rect. | 7 | 21 |
| 58 | 223.82 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 14 |
| 61 | 223.88 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 71 | 224.11 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 72 | 224.14 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 98 | 224.66 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 114 | 224.89 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 116 | 224.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 142 | 225.75 | temperature | 25 | 90 | < th | dose independent | sin | 20 | NA |
| 162 | 226.15 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 197 | 227.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 20 |
| 204 | 227.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 205 | 227.23 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 208 | 227.25 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 16 |
| 217 | 227.36 | humidity | 80 | 43200 | > th | dose dependent | sin | 4 | NA |
| 240 | 227.50 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 14 |
| 275 | 227.67 | humidity | 90 | 43200 | < th | dose independent | sin | 15 | NA |
| 301 | 227.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 305 | 227.83 | humidity | 80 | 43200 | > th | dose independent | sin | 20 | NA |
| 307 | 227.85 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 20 |
| 339 | 228.02 | humidity | 80 | 43200 | < th | dose independent | sin | 20 | NA |
| 344 | 228.04 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 16 |
| 351 | 228.08 | temperature | 25 | 90 | > th | dose independent | rect. | 10 | 12 |
| 355 | 228.12 | humidity | 80 | 43200 | > th | dose independent | sin | 0 | NA |
| 362 | 228.16 | temperature | 25 | 90 | > th | dose independent | rect. | 10 | 10 |
| 365 | 228.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 377 | 228.23 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 381 | 228.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 397 | 228.31 | humidity | 90 | 43200 | < th | dose independent | sin | 6 | NA |
| 399 | 228.33 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 407 | 228.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 19 |
| 432 | 228.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 469 | 228.56 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 13 |
| 501 | 228.67 | humidity | 80 | 43200 | < th | dose independent | sin | 0 | NA |
| 514 | 228.71 | humidity | 90 | 43200 | > th | dose independent | sin | 15 | NA |
| 516 | 228.71 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 522 | 228.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 585 | 228.91 | humidity | 90 | 43200 | > th | dose independent | sin | 7 | NA |
| 586 | 228.91 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 15 |
| 590 | 228.94 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 602 | 228.97 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 612 | 229.00 | humidity | 70 | 43200 | > th | dose dependent | sin | 1 | NA |
| 637 | 229.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 650 | 229.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 720 | 229.39 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 727 | 229.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 773 | 229.62 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 774 | 229.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 781 | 229.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 818 | 229.82 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 850 | 229.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 904 | 230.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 945 | 230.31 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 984 | 230.43 | temperature | 25 | 270 | < th | dose independent | sin | 23 | NA |