Os02g0600000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0600000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.71 | 0.412 | 8.26 | -2.88 | 0.491 | -0.544 | 0.594 | 1.78 | -0.385 | 24 | 21.38 | 4554 | -- | -- |
| 77.83 | 0.411 | 8.18 | -2.6 | 0.49 | -1.05 | 0.424 | -- | -0.294 | 23.5 | 18.7 | 4655 | -- | -- |
| 78.22 | 0.412 | 8.26 | -2.9 | 0.486 | -0.547 | -- | 1.78 | -0.386 | 23.8 | 21.4 | 4571 | -- | -- |
| 78.94 | 0.414 | 8.19 | -2.61 | 0.469 | -1.07 | -- | -- | -0.282 | 23.7 | 18.7 | 4574 | -- | -- |
| 92.88 | 0.449 | 8.25 | -2.84 | -- | -0.601 | -- | 1.54 | -0.385 | -- | 21.39 | 3694 | -- | -- |
| 94.14 | 0.455 | 8.13 | -2.01 | 0.499 | -- | 0.632 | -- | -0.0364 | 0.0123 | -- | -- | -- | -- |
| 95.86 | 0.458 | 8.13 | -2.03 | 0.497 | -- | -- | -- | -0.0389 | 23.9 | -- | -- | -- | -- |
| 93.07 | 0.449 | 8.18 | -2.72 | -- | -1.14 | -- | -- | -0.293 | -- | 18.6 | 5140 | -- | -- |
| 200.73 | 0.66 | 8.09 | -- | 0.505 | 0.353 | -- | -- | 0.133 | 23.8 | 31.2 | 1913 | -- | -- |
| 111.4 | 0.493 | 8.12 | -2.02 | -- | -- | -- | -- | -0.0324 | -- | -- | -- | -- | -- |
| 204.53 | 0.669 | 8.08 | -- | 0.472 | -- | -- | -- | 0.187 | 23.6 | -- | -- | -- | -- |
| 215.94 | 0.687 | 8.07 | -- | -- | 0.335 | -- | -- | 0.167 | -- | 31.2 | 1913 | -- | -- |
| 218.56 | 0.69 | 8.07 | -- | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.83 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 2 | 73.83 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 3 | 73.83 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 15 | 74.04 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 28 | 74.34 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 35 | 74.49 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 39 | 74.51 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 41 | 74.54 | wind | 7.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 44 | 74.57 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 46 | 74.58 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 55 | 74.69 | wind | 7.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 60 | 74.72 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 63 | 74.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 65 | 74.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 78 | 74.86 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 16 | 21 |
| 81 | 74.89 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 90 | 74.92 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 100 | 74.94 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 103 | 74.95 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 107 | 74.96 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 117 | 74.98 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 133 | 74.98 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 161 | 75.02 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 193 | 75.05 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 195 | 75.05 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 197 | 75.06 | humidity | 70.0 | 43200 | < th | dose independent | no | NA | NA |
| 213 | 75.07 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 231 | 75.09 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 234 | 75.10 | humidity | 70.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 235 | 75.10 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 241 | 75.10 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 243 | 75.10 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 244 | 75.10 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 265 | 75.13 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 269 | 75.13 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 281 | 75.14 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 294 | 75.15 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 297 | 75.16 | humidity | 70.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 307 | 75.17 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 315 | 75.18 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 6 | 19 |
| 323 | 75.19 | humidity | 60.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 362 | 75.21 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 20 | 16 |
| 375 | 75.22 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 377 | 75.23 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 396 | 75.23 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 485 | 75.30 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 496 | 75.31 | humidity | 60.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 544 | 75.33 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 11 | 22 |
| 607 | 75.38 | humidity | 70.0 | 43200 | > th | dose independent | no | NA | NA |
| 609 | 75.38 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 648 | 75.40 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 683 | 75.43 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 701 | 75.43 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 738 | 75.46 | humidity | 70.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 758 | 75.46 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 11 | 22 |
| 762 | 75.47 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 775 | 75.47 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 792 | 75.48 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 836 | 75.50 | humidity | 70.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 846 | 75.50 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 852 | 75.51 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 854 | 75.51 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 860 | 75.51 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 870 | 75.51 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 11 | 12 |
| 876 | 75.52 | humidity | 60.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 879 | 75.52 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 884 | 75.52 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 898 | 75.52 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 9 | 16 |
| 907 | 75.53 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 910 | 75.53 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 921 | 75.53 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 947 | 75.54 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 980 | 75.55 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 986 | 75.55 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 8 |