Os02g0599400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0599400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.34 | 0.484 | 11.3 | -1.68 | 1.26 | 0.783 | 1.4 | -1.87 | -1.01 | 12.4 | 10.04 | 1478 | -- | -- |
| 110.53 | 0.49 | 11.2 | -1.5 | 1.14 | 0.933 | 1.33 | -- | -0.929 | 12.1 | 10 | 1603 | -- | -- |
| 111.46 | 0.492 | 11.3 | -1.61 | 1.49 | 0.709 | -- | -2.59 | -1.05 | 12 | 11.71 | 1163 | -- | -- |
| 116.37 | 0.502 | 11.2 | -1.3 | 1.66 | 0.941 | -- | -- | -0.849 | 11.6 | 10.03 | 1048 | -- | -- |
| 128.1 | 0.527 | 11.2 | -0.89 | -- | 0.978 | -- | 0.589 | -0.883 | -- | 5.562 | 41 | -- | -- |
| 126.13 | 0.527 | 11.2 | -1.16 | 1.29 | -- | 1.23 | -- | -0.68 | 12.4 | -- | -- | -- | -- |
| 132.67 | 0.539 | 11.2 | -1.11 | 1.28 | -- | -- | -- | -0.674 | 12.4 | -- | -- | -- | -- |
| 120.72 | 0.512 | 11.2 | -1.12 | -- | 1.12 | -- | -- | -0.725 | -- | 5.95 | 132 | -- | -- |
| 147.31 | 0.565 | 11.1 | -- | 1.65 | 0.976 | -- | -- | -0.635 | 11.4 | 8.7 | 1046 | -- | -- |
| 236.29 | 0.718 | 11.2 | -1.15 | -- | -- | -- | -- | -0.695 | -- | -- | -- | -- | -- |
| 165.17 | 0.601 | 11.1 | -- | 1.3 | -- | -- | -- | -0.55 | 12.5 | -- | -- | -- | -- |
| 152.95 | 0.576 | 11.2 | -- | -- | 1.15 | -- | -- | -0.639 | -- | 6.63 | 125 | -- | -- |
| 271.43 | 0.769 | 11.2 | -- | -- | -- | -- | -- | -0.567 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 7 | 98.82 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 8 | 98.97 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 9 | 99.05 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 19 | 99.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 85 | 101.68 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 140 | 103.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 143 | 103.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 146 | 103.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 152 | 103.18 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 200 | 103.66 | radiation | 20 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 297 | 104.38 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 372 | 104.81 | radiation | 10 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 374 | 104.85 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 378 | 104.87 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 13 |
| 387 | 104.98 | radiation | 10 | 1440 | > th | dose independent | sin | 22 | NA |
| 399 | 105.12 | radiation | 1 | 270 | > th | dose independent | sin | 1 | NA |
| 402 | 105.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 412 | 105.31 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 416 | 105.35 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 15 |
| 451 | 105.72 | humidity | 70 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 467 | 105.92 | radiation | 1 | 270 | < th | dose independent | sin | 1 | NA |
| 490 | 106.10 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 495 | 106.10 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 527 | 106.38 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 552 | 106.49 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 555 | 106.50 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 584 | 106.66 | radiation | 10 | 90 | < th | dose dependent | sin | 23 | NA |
| 611 | 106.75 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 707 | 106.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 715 | 106.95 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 14 | 18 |
| 716 | 106.96 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 6 |
| 826 | 107.28 | humidity | 50 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 851 | 107.39 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 6 |
| 869 | 107.44 | temperature | 10 | 90 | > th | dose dependent | rect. | 22 | 17 |
| 891 | 107.57 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 17 |
| 895 | 107.58 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 910 | 107.64 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 930 | 107.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 971 | 107.88 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 981 | 107.90 | humidity | 50 | 270 | > th | dose independent | rect. | 13 | 7 |
| 1000 | 107.97 | radiation | 30 | 270 | < th | dose dependent | rect. | 15 | 3 |