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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0599100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0309) R2 : 0.148
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.571 (0.081) R2dC : 0.0933 R2C : 0.0723
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.363 (0.065) R2dN8 : 0.0754 R2N8 : 0.0544
σ : 0.583
deviance : 155.31
__
_____
C
peak time of C : 18
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.88 0.508 -20.2 82.2 0.604 -10600 0.554 37000 0.433 18.2 90 91 9 1
145.66 0.566 3.26 0.539 0.589 0.797 0.483 -- 0.426 17.9 94.96 106 8.03 0.721
117.63 0.505 -20.2 82.1 0.608 -10600 -- 37000 0.437 18.2 90 91 9 1
127.43 0.526 3.26 0.498 0.567 2.59 -- -- 0.418 17.5 90 130 8.2 0.901
136.66 0.544 -20.2 82.1 -- -10600 -- 37000 0.421 -- 90.01 91 9 1
146.89 0.568 3.26 0.555 0.577 -- 0.411 -- 0.423 17.9 -- -- -- --
147.3 0.568 3.26 0.551 0.579 -- -- -- 0.425 17.9 -- -- -- --
145.87 0.563 3.25 0.514 -- 2.58 -- -- 0.429 -- 89.05 115 8.33 0.7
133.13 0.537 3.28 -- 0.619 2.95 -- -- 0.393 18.4 89.17 129 8.4 0.683
164.69 0.6 3.25 0.534 -- -- -- -- 0.412 -- -- -- -- --
155.31 0.583 3.28 -- 0.571 -- -- -- 0.363 18 -- -- -- --
152.64 0.575 3.26 -- -- 2.75 -- -- 0.376 -- 89.01 125 8.43 0.676
172.22 0.613 3.27 -- -- -- -- -- 0.352 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.88 humidity 90.0 90 > th dose independent rect. 9 1
2 116.88 humidity 90.0 90 > th dose dependent rect. 9 1
3 116.94 precipitation 0.1 1440 > th dose independent rect. 23 2
4 116.94 precipitation 0.1 1440 > th dose dependent rect. 23 2
31 121.02 wind 1.0 720 < th dose dependent rect. 23 2
39 121.47 precipitation 0.1 1440 < th dose independent rect. 1 1
40 121.47 precipitation 0.1 1440 < th dose dependent rect. 1 1
42 122.40 precipitation 0.1 1440 < th dose independent rect. 24 3
43 122.40 precipitation 0.1 1440 < th dose dependent rect. 24 3
50 123.09 wind 1.0 720 < th dose independent rect. 23 2
51 123.42 wind 1.0 1440 < th dose independent rect. 12 3
55 123.68 wind 1.0 1440 < th dose independent rect. 9 6
64 124.13 wind 1.0 1440 < th dose dependent rect. 12 3
68 124.30 wind 1.0 1440 > th dose independent rect. 12 3
70 124.35 wind 1.0 1440 < th dose independent rect. 10 15
77 124.51 wind 1.0 1440 < th dose independent rect. 12 13
90 124.82 wind 1.0 1440 < th dose dependent rect. 9 6
99 125.21 radiation 40.0 4320 > th dose independent rect. 15 1
137 125.29 wind 1.0 1440 < th dose dependent rect. 9 16
138 125.32 wind 1.0 1440 < th dose dependent rect. 12 13
140 125.36 wind 1.0 1440 > th dose independent rect. 9 6
154 125.71 wind 1.0 1440 < th dose dependent rect. 12 7
200 126.42 precipitation 0.1 4320 < th dose independent rect. 4 2
201 126.42 precipitation 0.1 4320 < th dose independent rect. 4 4
202 126.42 precipitation 0.1 4320 < th dose dependent rect. 4 2
203 126.42 precipitation 0.1 4320 < th dose dependent rect. 4 4
206 126.48 precipitation 0.1 4320 > th dose dependent rect. 4 4
209 126.51 precipitation 0.1 4320 > th dose independent rect. 4 4
224 126.62 precipitation 0.1 4320 > th dose dependent rect. 3 7
230 126.67 precipitation 0.1 4320 > th dose independent rect. 4 2
231 126.70 precipitation 0.1 4320 > th dose dependent rect. 4 2
238 126.81 wind 1.0 1440 > th dose independent rect. 10 15
243 126.86 wind 1.0 1440 > th dose independent rect. 23 2
248 126.90 precipitation 0.1 4320 > th dose dependent rect. 3 10
257 126.95 wind 1.0 1440 > th dose independent rect. 12 13
277 127.29 precipitation 0.1 4320 < th dose independent rect. 7 1
279 127.29 precipitation 0.1 4320 < th dose dependent rect. 7 1
293 127.51 precipitation 0.1 4320 > th dose independent rect. 7 1
295 127.51 precipitation 0.1 4320 > th dose dependent rect. 7 1
299 127.58 precipitation 0.1 4320 > th dose independent rect. 3 10
304 127.64 precipitation 0.1 4320 < th dose independent rect. 3 10
305 127.64 precipitation 0.1 4320 < th dose dependent rect. 3 10
321 127.85 wind 1.0 1440 < th dose independent sin 19 NA
333 128.02 humidity 90.0 4320 > th dose dependent rect. 7 2
364 128.28 precipitation 0.1 4320 > th dose dependent rect. 24 17
366 128.29 radiation 1.0 4320 < th dose dependent rect. 7 2
373 128.39 wind 1.0 720 < th dose dependent rect. 17 8
409 128.79 precipitation 0.1 4320 < th dose independent rect. 24 17
410 128.79 precipitation 0.1 4320 < th dose dependent rect. 24 17
415 128.84 precipitation 0.1 4320 > th dose independent rect. 24 17
416 128.85 radiation 1.0 4320 > th dose independent rect. 7 3
424 128.92 radiation 1.0 4320 < th dose independent rect. 7 3
462 129.18 wind 1.0 1440 < th dose dependent sin 19 NA
495 129.52 precipitation 0.1 4320 > th dose dependent sin 5 NA
508 129.65 precipitation 0.1 4320 > th dose independent sin 4 NA
514 129.69 precipitation 0.1 4320 < th dose independent sin 4 NA
515 129.69 precipitation 0.1 4320 < th dose dependent sin 4 NA
534 129.82 precipitation 0.1 4320 > th dose dependent rect. 24 10
585 130.14 wind 1.0 720 < th dose independent rect. 18 7
619 130.39 precipitation 0.1 4320 > th dose dependent rect. 18 2
625 130.43 wind 1.0 1440 > th dose independent sin 19 NA
636 130.48 precipitation 0.1 4320 < th dose independent rect. 24 10
639 130.48 precipitation 0.1 4320 < th dose dependent rect. 24 10
657 130.59 precipitation 0.1 4320 > th dose independent rect. 24 10
711 130.86 precipitation 0.1 4320 > th dose dependent rect. 18 23
752 131.04 precipitation 0.1 4320 > th dose dependent rect. 18 19
758 131.07 precipitation 0.1 4320 > th dose dependent rect. 18 17
769 131.12 precipitation 0.1 4320 < th dose independent rect. 24 20
771 131.12 precipitation 0.1 4320 < th dose dependent rect. 24 20
772 131.13 precipitation 0.1 4320 > th dose independent rect. 24 20
780 131.17 wind 1.0 4320 > th dose independent rect. 18 1
833 131.50 humidity 90.0 4320 > th dose dependent rect. 7 7
882 131.71 humidity 80.0 1440 < th dose independent rect. 11 1
903 131.85 wind 1.0 4320 < th dose independent rect. 18 1
910 131.87 precipitation 0.1 4320 > th dose independent rect. 18 2
914 131.88 precipitation 0.1 4320 < th dose independent rect. 18 2
916 131.88 precipitation 0.1 4320 < th dose dependent rect. 18 2
948 132.01 humidity 80.0 10 > th dose independent rect. 10 1