Os02g0598800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0598800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.76 | 0.435 | 9.47 | 0.0143 | 1 | -1.75 | -0.298 | 1.35 | 0.036 | 18.5 | 29.3 | 205 | -- | -- |
| 87.68 | 0.436 | 9.45 | 0.224 | 0.981 | -1.79 | -0.593 | -- | 0.0637 | 18.5 | 28.7 | 217 | -- | -- |
| 85.95 | 0.432 | 9.47 | 0.000551 | 1 | -1.73 | -- | 1.46 | 0.0309 | 18.5 | 29.2 | 210 | -- | -- |
| 88.29 | 0.438 | 9.44 | 0.25 | 1.01 | -1.75 | -- | -- | 0.0876 | 18.4 | 28.5 | 218 | -- | -- |
| 127.23 | 0.525 | 9.43 | 0.217 | -- | -2.33 | -- | 0.611 | -0.0315 | -- | 30.02 | 303 | -- | -- |
| 130.38 | 0.535 | 9.36 | 0.703 | 1.46 | -- | -0.331 | -- | 0.462 | 17.6 | -- | -- | -- | -- |
| 130.65 | 0.535 | 9.36 | 0.705 | 1.46 | -- | -- | -- | 0.46 | 17.6 | -- | -- | -- | -- |
| 126.45 | 0.524 | 9.45 | 0.0532 | -- | -2.53 | -- | -- | -0.0684 | -- | 29.7 | 303 | -- | -- |
| 89.77 | 0.441 | 9.45 | -- | 0.986 | -1.85 | -- | -- | 0.0404 | 18.5 | 28.4 | 218 | -- | -- |
| 240.78 | 0.725 | 9.34 | 0.658 | -- | -- | -- | -- | 0.425 | -- | -- | -- | -- | -- |
| 143.73 | 0.561 | 9.38 | -- | 1.44 | -- | -- | -- | 0.382 | 17.6 | -- | -- | -- | -- |
| 126.52 | 0.524 | 9.45 | -- | -- | -2.55 | -- | -- | -0.0776 | -- | 29.7 | 303 | -- | -- |
| 252.19 | 0.741 | 9.36 | -- | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.03 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 10 | 85.28 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 17 |
| 12 | 85.31 | temperature | 25.0 | 720 | < th | dose dependent | sin | 1 | NA |
| 52 | 86.98 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 53 | 87.02 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 78 | 87.82 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 102 | 88.44 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 103 | 88.46 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 120 | 88.78 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 142 | 89.14 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 185 | 89.69 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 190 | 89.75 | temperature | 30.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 225 | 90.07 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 235 | 90.21 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 255 | 90.39 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 285 | 90.64 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 326 | 90.96 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 328 | 90.98 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 366 | 91.14 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 378 | 91.19 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 422 | 91.42 | temperature | 15.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 433 | 91.46 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 473 | 91.62 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 497 | 91.68 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 504 | 91.69 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 548 | 91.81 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 631 | 92.07 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 696 | 92.29 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 729 | 92.41 | temperature | 15.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 733 | 92.41 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 769 | 92.52 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 856 | 92.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 857 | 92.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 858 | 92.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 859 | 92.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |