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Os02g0598400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipovitellin, superhelical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.81 (0.0163) R2 : 0.629
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.13 (0.0427) R2dC : 0.574 R2C : 0.542
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.312 (0.0343) R2dN8 : 0.0868 R2N8 : 0.0552
σ : 0.307
deviance : 43.19
__
_____
C
peak time of C : 18.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.21 0.294 9.85 -0.37 1.04 0.504 0.285 -3.28 0.213 18.4 25.6 117 -- --
42.19 0.303 9.81 -0.0368 1.05 0.25 0.00357 -- 0.29 18.4 23.89 98 -- --
39.39 0.292 9.85 -0.351 1.04 0.506 -- -3.12 0.221 18.4 25.7 104 -- --
41.57 0.3 9.82 -0.0691 1.07 0.414 -- -- 0.251 18.5 8.774 14 -- --
72.91 0.398 9.86 -0.591 -- 1.25 -- -2.99 0.0961 -- 24.5 355 -- --
43.17 0.308 9.81 0.0198 1.13 -- 0.0728 -- 0.313 18.1 -- -- -- --
43.18 0.308 9.81 0.0191 1.13 -- -- -- 0.314 18.1 -- -- -- --
79.23 0.415 9.81 -0.184 -- 1.03 -- -- 0.188 -- 24.3 362 -- --
41.66 0.301 9.82 -- 1.08 0.382 -- -- 0.266 18.4 10.27 13 -- --
109.63 0.489 9.79 -0.0128 -- -- -- -- 0.289 -- -- -- -- --
43.19 0.307 9.81 -- 1.13 -- -- -- 0.312 18.1 -- -- -- --
80.09 0.417 9.8 -- -- 0.997 -- -- 0.215 -- 24.4 356 -- --
109.64 0.489 9.79 -- -- -- -- -- 0.29 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.68 temperature 10.0 10 > th dose dependent rect. 9 20
3 35.83 temperature 10.0 90 > th dose dependent rect. 8 20
9 36.16 temperature 15.0 10 > th dose dependent rect. 9 6
19 36.41 atmosphere 1010.0 30 < th dose independent rect. 9 6
23 36.49 temperature 15.0 10 > th dose dependent rect. 9 17
26 36.52 wind 7.0 90 < th dose independent rect. 8 21
33 36.64 temperature 20.0 270 > th dose dependent rect. 8 3
35 36.65 temperature 15.0 10 > th dose dependent rect. 9 15
46 36.74 wind 7.0 10 < th dose independent rect. 9 20
48 36.75 temperature 20.0 270 > th dose dependent rect. 9 1
89 37.07 temperature 25.0 270 > th dose independent rect. 9 2
94 37.10 temperature 20.0 10 > th dose independent rect. 9 6
116 37.23 atmosphere 1010.0 10 < th dose independent rect. 9 20
120 37.27 temperature 15.0 90 > th dose independent rect. 8 21
127 37.31 temperature 30.0 90 < th dose dependent rect. 5 16
134 37.34 temperature 15.0 10 > th dose dependent rect. 9 13
141 37.37 temperature 15.0 30 > th dose dependent rect. 9 10
160 37.44 humidity 90.0 30 < th dose independent rect. 5 4
163 37.45 humidity 90.0 10 < th dose independent rect. 9 6
176 37.52 radiation 1.0 90 > th dose independent rect. 4 3
192 37.53 temperature 30.0 10 < th dose dependent rect. 5 15
234 37.63 wind 7.0 10 < th dose independent rect. 9 6
235 37.64 humidity 50.0 14400 > th dose independent rect. 5 4
240 37.65 wind 7.0 90 < th dose independent rect. 8 7
272 37.73 wind 9.0 90 < th dose dependent rect. 8 20
310 37.79 temperature 30.0 270 < th dose dependent rect. 2 18
314 37.80 radiation 1.0 90 > th dose dependent rect. 5 2
379 37.88 wind 9.0 30 < th dose dependent rect. 9 6
384 37.89 temperature 25.0 90 > th dose independent rect. 9 10
405 37.93 temperature 25.0 90 > th dose independent rect. 9 13
409 37.94 wind 5.0 270 < th dose independent rect. 9 1
419 37.96 temperature 10.0 10 > th dose dependent rect. 5 4
454 38.04 atmosphere 1005.0 90 > th dose dependent rect. 5 3
458 38.05 wind 5.0 10 < th dose independent rect. 5 4
460 38.05 atmosphere 1010.0 30 < th dose independent rect. 9 17
475 38.08 wind 5.0 270 < th dose independent rect. 4 2
501 38.11 atmosphere 995.0 10 > th dose independent rect. 9 20
507 38.12 wind 7.0 270 < th dose dependent rect. 8 3
532 38.14 temperature 15.0 10 > th dose independent rect. 9 20
538 38.15 wind 5.0 270 < th dose independent rect. 8 3
541 38.15 temperature 10.0 90 > th dose dependent rect. 4 4
555 38.16 radiation 20.0 4320 > th dose dependent rect. 16 16
556 38.16 wind 9.0 10 < th dose dependent rect. 9 20
559 38.17 precipitation 0.1 10 < th dose independent rect. 5 4
560 38.17 wind 9.0 1440 < th dose independent rect. 5 5
565 38.17 precipitation 0.1 10 < th dose dependent rect. 5 4
579 38.20 temperature 10.0 10 > th dose independent rect. 5 4
581 38.20 temperature 30.0 10 < th dose independent rect. 5 4
582 38.20 humidity 50.0 10 > th dose independent rect. 5 4
584 38.20 atmosphere 995.0 10 > th dose independent rect. 5 4
585 38.20 atmosphere 1015.0 10 < th dose independent rect. 5 4
588 38.20 atmosphere 1000.0 10 > th dose dependent rect. 5 4
594 38.21 wind 7.0 270 < th dose dependent rect. 9 1
603 38.22 temperature 15.0 1440 > th dose independent rect. 6 4
652 38.27 radiation 10.0 270 < th dose independent rect. 3 4
655 38.27 atmosphere 995.0 90 > th dose independent rect. 8 21
663 38.28 precipitation 0.1 270 < th dose independent rect. 3 3
670 38.28 precipitation 0.1 270 < th dose dependent rect. 3 3
690 38.31 wind 9.0 270 < th dose dependent rect. 4 2
710 38.33 wind 9.0 10 < th dose dependent rect. 5 4
727 38.35 temperature 10.0 90 > th dose independent rect. 5 3
729 38.35 temperature 30.0 90 < th dose independent rect. 5 3
730 38.35 humidity 50.0 90 > th dose independent rect. 5 3
732 38.35 atmosphere 995.0 90 > th dose independent rect. 5 3
733 38.35 atmosphere 1015.0 90 < th dose independent rect. 5 3
734 38.35 radiation 40.0 10 < th dose independent rect. 5 4
774 38.38 radiation 40.0 90 < th dose independent rect. 5 3
799 38.40 radiation 20.0 270 < th dose independent rect. 4 2
802 38.40 wind 7.0 90 < th dose independent rect. 8 11
820 38.42 temperature 10.0 43200 > th dose independent rect. 10 6
841 38.44 atmosphere 1005.0 90 > th dose independent rect. 5 3
856 38.45 atmosphere 1005.0 10 > th dose independent rect. 5 4
860 38.45 radiation 40.0 270 < th dose dependent rect. 4 2
891 38.47 precipitation 0.1 10 < th dose independent rect. 9 20
892 38.47 radiation 10.0 10 < th dose dependent sin 11 NA
900 38.47 precipitation 0.1 10 < th dose dependent rect. 9 20
921 38.49 precipitation 0.1 90 < th dose independent rect. 8 20
924 38.49 humidity 90.0 90 < th dose dependent rect. 6 1
932 38.49 precipitation 0.1 90 < th dose dependent rect. 8 20
971 38.52 precipitation 0.1 270 < th dose independent rect. 6 21
978 38.52 precipitation 0.1 270 < th dose dependent rect. 6 21