Os02g0595300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0595300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.55 | 0.524 | 6.37 | -0.757 | 1.04 | 0.279 | -0.132 | -2.51 | -0.0368 | 12.8 | 24.9 | 832 | -- | -- |
| 130.09 | 0.531 | 6.43 | -1.32 | 1.13 | 0.444 | -0.776 | -- | -0.213 | 12.6 | 18.8 | 5861 | -- | -- |
| 124.58 | 0.52 | 6.37 | -0.747 | 1.04 | 0.288 | -- | -2.57 | -0.0304 | 12.8 | 24.9 | 857 | -- | -- |
| 129.33 | 0.53 | 6.41 | -0.885 | 1.12 | 0.715 | -- | -- | -0.123 | 12.5 | 19 | 23434 | -- | -- |
| 179.39 | 0.624 | 6.32 | -0.429 | -- | 0.864 | -- | -3.3 | 0.203 | -- | 25.09 | 880 | -- | -- |
| 134.72 | 0.544 | 6.46 | -1.53 | 1.12 | -- | -0.683 | -- | -0.325 | 12.5 | -- | -- | -- | -- |
| 136.71 | 0.548 | 6.46 | -1.56 | 1.13 | -- | -- | -- | -0.328 | 12.6 | -- | -- | -- | -- |
| 195.47 | 0.651 | 6.42 | -1.38 | -- | 0.739 | -- | -- | -0.0884 | -- | 25.56 | 908 | -- | -- |
| 132.44 | 0.536 | 6.36 | -- | 1.11 | 1.4 | -- | -- | 0.11 | 12.6 | 16.54 | 47520 | -- | -- |
| 216.35 | 0.687 | 6.48 | -1.6 | -- | -- | -- | -- | -0.348 | -- | -- | -- | -- | -- |
| 200.53 | 0.662 | 6.42 | -- | 1.15 | -- | -- | -- | -0.155 | 12.7 | -- | -- | -- | -- |
| 210.09 | 0.675 | 6.38 | -- | -- | 1.45 | -- | -- | 0.108 | -- | 16.63 | 47520 | -- | -- |
| 283.52 | 0.786 | 6.44 | -- | -- | -- | -- | -- | -0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.46 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 14 |
| 15 | 119.50 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 24 | 119.67 | temperature | 20 | 270 | > th | dose dependent | sin | 13 | NA |
| 41 | 120.03 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 14 |
| 46 | 120.18 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 50 | 120.30 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 57 | 120.33 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 62 | 120.37 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 7 |
| 78 | 120.57 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 101 | 120.81 | temperature | 20 | 10 | > th | dose independent | sin | 11 | NA |
| 122 | 121.01 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 136 | 121.20 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 153 | 121.40 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 177 | 121.64 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 178 | 121.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 180 | 121.65 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 200 | 121.75 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 215 | 121.79 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 217 | 121.79 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 239 | 121.88 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 244 | 121.93 | temperature | 30 | 90 | < th | dose dependent | sin | 11 | NA |
| 252 | 121.97 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 12 |
| 256 | 121.99 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 260 | 122.00 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 276 | 122.05 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 294 | 122.17 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 302 | 122.21 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 313 | 122.27 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 321 | 122.30 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 325 | 122.31 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 7 |
| 337 | 122.35 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 345 | 122.39 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 348 | 122.39 | radiation | 40 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 365 | 122.42 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 373 | 122.45 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 387 | 122.47 | temperature | 20 | 10 | < th | dose independent | rect. | 24 | 6 |
| 391 | 122.48 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 393 | 122.48 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 403 | 122.51 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 404 | 122.51 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 409 | 122.53 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 417 | 122.55 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 428 | 122.60 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 474 | 122.69 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 478 | 122.70 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 529 | 122.78 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 560 | 122.84 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 18 |
| 570 | 122.85 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 18 |
| 592 | 122.88 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 14 |
| 595 | 122.88 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 608 | 122.89 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 616 | 122.90 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 4 | NA |
| 619 | 122.90 | radiation | 40 | 4320 | < th | dose independent | rect. | 13 | 9 |
| 626 | 122.90 | radiation | 40 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 633 | 122.90 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 651 | 122.91 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 652 | 122.91 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 654 | 122.91 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 657 | 122.92 | radiation | 40 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 677 | 122.92 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 699 | 122.94 | radiation | 40 | 4320 | < th | dose independent | sin | 14 | NA |
| 826 | 123.00 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 3 | NA |
| 837 | 123.00 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 4 | 18 |
| 847 | 123.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 18 |
| 908 | 123.03 | atmosphere | 1010 | 14400 | < th | dose independent | no | NA | NA |
| 923 | 123.03 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 971 | 123.05 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 18 | 17 |